To follow up on my previous post, I have uploaded the input data to OxFile https://oxfile.ox.ac.uk/oxfile/work/extBox?execution=e2s1 to see if anyone can help with trouble shooting the issue.
The following command
eddy --imain=/Volumes/DANIEL/dti_tracy/trac/HMN002/dmri/dwi_orig_las
--mask=/Volumes/DANIEL/dti_tracy/trac/HMN002/dmri/b0
--index=/Volumes/DANIEL/Tracy/HMN_W1/HMN002/index.txt
--acqp=/Volumes/DANIEL/Tracy/HMN_W1/HMN002/acqp.txt
--bvecs=/Volumes/DANIEL/dti_tracy/trac/HMN002/dmri/bvecs
--bvals=/Volumes/DANIEL/dti_tracy/trac/HMN002/dmri/bvals
--repol
--estimate_move_by_susceptibility
--out=/Volumes/DANIEL/dti_tracy/trac/HMN002/dmri/dwi
Results in the following error after being stuck at Setting linear second level model for 30+ minutes.
Setting linear second level model
Resetting second level model
Segmentation violation, Address not mapped, Offending address = 0x30
eddy 0x0000000105599890 NEWIMAGE::volume<float>::volume(NEWIMAGE::volume<float> const&, NEWIMAGE::constructionMode)
eddy 0x000000010548ac08 EDDY::ECScanManager::GetSuscHzOffResField(unsigned int, EDDY::ScanType) const
eddy 0x000000010548b541 EDDY::ECScanManager::GetUnwarpedScan(unsigned int, NEWIMAGE::volume<float>&, EDDY::ScanType) const
eddy 0x00000001053858f8 EDDY::LoadPredictionMaker(EDDY::EddyCommandLineOptions const&, EDDY::ScanType, EDDY::ECScanManager const&, unsigned int, float, NEWIMAGE::volume<float>&, bool)
eddy 0x00000001053d835d EDDY::MoveBySuscCFImpl::recalculate_sum_images()
eddy 0x00000001053cdae2 EDDY::MoveBySuscCFImpl::cf(armawrap::AWColVector<double> const&)
eddy 0x00000001053cd7a9 EDDY::MoveBySuscCF::cf(armawrap::AWColVector<double> const&) const
eddy 0x00000001056da96f MISCMATHS::levmar(MISCMATHS::NonlinParam const&, MISCMATHS::NonlinCF const&)
eddy 0x000000010537898e main
libdyld.dylib 0x00007fff644f53d5 start
??? 0x000000000000000a 0x0
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