Dear Wayne
Thank you for your prompt reply.
I will check the Bruker aq parameters, but before, I copy the output I
got when I installed the update (I hope that I did it correctly, I
copied the zip into the ccpnmr top directory):
[root@gre026396 ccpnmr]# ls
bin ccpnmr2.4 ccpnmr2.4Updates20190301.zip doc lib python2.7
tcl8.6 tk8.6
[root@gre026396 ccpnmr]# unzip -l ccpnmr2.4Updates20190301.zip
Archive: ccpnmr2.4Updates20190301.zip
warning [ccpnmr2.4Updates20190301.zip]: 127 extra bytes at beginning or
within zipfile
(attempting to process anyway)
error [ccpnmr2.4Updates20190301.zip]: reported length of central
directory is
-127 bytes too long (Atari STZip zipfile? J.H.Holm ZIPSPLIT 1.1
zipfile?). Compensating...
Length Date Time Name
--------- ---------- ----- ----
0 12-11-2018 14:33 ccpnmr2.4/
0 12-11-2018 14:33 ccpnmr2.4/data/
0 12-11-2018 14:33 ccpnmr2.4/data/ccp/
0 12-11-2018 14:33 ccpnmr2.4/data/ccp/nmr/
0 12-11-2018 14:33 ccpnmr2.4/data/ccp/nmr/NmrExpPrototype/
8920 12-11-2018 14:33
ccpnmr2.4/data/ccp/nmr/NmrExpPrototype/313+zzz_ccpn_2017-06-11-22-39-06-334_00001.xml
9393 12-11-2018 14:33
ccpnmr2.4/data/ccp/nmr/NmrExpPrototype/314+zzz_ccpn_2017-06-11-22-42-59-978_00001.xml
20325 12-11-2018 14:33
ccpnmr2.4/data/ccp/nmr/NmrExpPrototype/316+zzz_ccpn_2017-06-11-22-54-05-183_00001.xml
13718 12-11-2018 14:33
ccpnmr2.4/data/ccp/nmr/NmrExpPrototype/317+zzz_ccpn_2017-06-11-23-07-07-118_00001.xml
0 12-11-2018 14:33 ccpnmr2.4/python/
0 12-11-2018 14:33 ccpnmr2.4/python/ccp/
0 12-11-2018 14:33 ccpnmr2.4/python/ccp/format/
0 12-11-2018 14:33 ccpnmr2.4/python/ccp/format/bruker/
22922 12-11-2018 14:33 ccpnmr2.4/python/ccp/format/bruker/acqParsIO.py
0 12-11-2018 14:33 ccpnmr2.4/python/ccp/format/shiftx/
7916 12-11-2018 14:33
ccpnmr2.4/python/ccp/format/shiftx/chemShiftsIO.py
0 12-11-2018 14:33 ccpnmr2.4/python/ccp/format/spectra/
0 12-11-2018 14:33 ccpnmr2.4/python/ccp/format/spectra/params/
6443 12-11-2018 14:33
ccpnmr2.4/python/ccp/format/spectra/params/NmrPipeParams.py
0 12-11-2018 14:33 ccpnmr2.4/python/ccp/general/
20951 12-11-2018 14:33 ccpnmr2.4/python/ccp/general/ArgumentServer.py
0 12-11-2018 14:33 ccpnmr2.4/python/ccp/gui/
34402 12-11-2018 14:33 ccpnmr2.4/python/ccp/gui/ViewStructureFrame.py
0 12-11-2018 14:33 ccpnmr2.4/python/ccp/lib/
15801 12-11-2018 14:33 ccpnmr2.4/python/ccp/lib/DataConvertLib.py
0 12-11-2018 14:33 ccpnmr2.4/python/ccpnmr/
0 12-11-2018 14:33 ccpnmr2.4/python/ccpnmr/analysis/
111144 12-11-2018 14:33
ccpnmr2.4/python/ccpnmr/analysis/AnalysisPopup.py
0 12-11-2018 14:33 ccpnmr2.4/python/ccpnmr/analysis/core/
131635 12-11-2018 14:33
ccpnmr2.4/python/ccpnmr/analysis/core/AssignmentBasic.py
100185 12-11-2018 14:33
ccpnmr2.4/python/ccpnmr/analysis/core/ConstraintBasic.py
83396 12-11-2018 14:33
ccpnmr2.4/python/ccpnmr/analysis/core/ExperimentBasic.py
122182 12-11-2018 14:33
ccpnmr2.4/python/ccpnmr/analysis/core/PeakBasic.py
7494 12-11-2018 14:33
ccpnmr2.4/python/ccpnmr/analysis/core/PrintBasic.py
65742 12-11-2018 14:33
ccpnmr2.4/python/ccpnmr/analysis/core/WindowDraw.py
0 12-11-2018 14:33 ccpnmr2.4/python/ccpnmr/analysis/frames/
50495 12-11-2018 14:33
ccpnmr2.4/python/ccpnmr/analysis/frames/PeakTableFrame.py
12580 12-11-2018 14:33
ccpnmr2.4/python/ccpnmr/analysis/frames/ResonanceFrame.py
213400 12-11-2018 14:33
ccpnmr2.4/python/ccpnmr/analysis/frames/WindowFrame.py
0 12-11-2018 14:33 ccpnmr2.4/python/ccpnmr/analysis/popups/
70659 12-11-2018 14:33
ccpnmr2.4/python/ccpnmr/analysis/popups/BrowseResonances.py
85312 12-11-2018 14:33
ccpnmr2.4/python/ccpnmr/analysis/popups/CalcDistConstraints.py
60641 12-11-2018 14:33
ccpnmr2.4/python/ccpnmr/analysis/popups/CalcRates.py
77875 12-11-2018 14:33
ccpnmr2.4/python/ccpnmr/analysis/popups/EditAssignment.py
110065 12-11-2018 14:33
ccpnmr2.4/python/ccpnmr/analysis/popups/EditExperiment.py
65463 12-11-2018 14:33
ccpnmr2.4/python/ccpnmr/analysis/popups/EditMolLabelling.py
96345 12-11-2018 14:33
ccpnmr2.4/python/ccpnmr/analysis/popups/EditSpectrum.py
50924 12-11-2018 14:33
ccpnmr2.4/python/ccpnmr/analysis/popups/EditSpinSystem.py
warning: filename too long--truncating.
I checked, and apparently, it is not there as you suggested:
[root@gre026396 ccpnmr]# pwd
/data/soft/ccpnmr
[root@gre026396 ccpnmr]# ls -l
/data/soft/ccpnmr/ccpnmr2.4/python/ccp/format/bruker/acqParsIO.py
-rw-r--r-- 1 1007 1007 22745 Mar 2 2015
/data/soft/ccpnmr/ccpnmr2.4/python/ccp/format/bruker/acqParsIO.py
my environment (.cshrc) looks OK:
setenv CCPNMR_TOP_DIR /data/soft/ccpnmr
setenv PYTHONPATH /data/soft/ccpnmr/ccpnmr2.4/python
and I open ccpnmr with
/data/soft/ccpnmr/bin/analysis
I do not know what went wrong ... maybe you could just send me this file
that I will place in the correct location ....
Best regards, Beate
On 7/29/19 3:47 PM, Wayne Boucher wrote:
> Hello,
>
> That looks like you don’t have the update for the file:
>
> /data/soft/ccpnmr/ccpnmr2.4/python/ccp/format/bruker/acqParsIO.py
>
> (which is required for the latest versions of TopSpin output to work with Analysis). So the second line number (415) doesn’t match what the current version has. The updated file should be 22922 bytes in size. Did you extract the update file into the correct directory?
>
> Wayne
>
>> On 29 Jul 2019, at 12:14, Beate Bersch <[log in to unmask]> wrote:
>>
>> I wanted to import relaxation data acquired as a pseudo-3D on Bruker. I already managed to do this, as I treated the data already using ccpnmr. However, I changed my computer, reinstalled ccpnmr 2.4.2 as described and extracted the update file
>>
>> Now, when I try to import the Pseudo-3D, I obtain this:
>> ...
>> Error converting '<>' to float: set to 0.0
>> Error converting '<>' to float: set to 0.0
>> Warning: swapped increments for 3D based on AQSEQ setting 1!
>> Exception in Tkinter callback
>> Traceback (most recent call last):
>> File "/data/soft/ccpnmr/python2.7/lib/python2.7/lib-tk/Tkinter.py", line 1532, in __call__
>> return self.func(*args)
>> File "/data/soft/ccpnmr/ccpnmr2.4/python/ccpnmr/analysis/popups/OpenSpectrum.py", line 375, in openSpectra
>> obj.shiftListName)
>> File "/data/soft/ccpnmr/ccpnmr2.4/python/ccpnmr/analysis/popups/OpenSpectrum.py", line 808, in openSpectrum
>> params = clazz(file, extraData=extraData)
>> File "/data/soft/ccpnmr/ccpnmr2.4/python/ccp/format/spectra/params/BrukerParams.py", line 82, in __init__
>> ExternalParams.__init__(self, **kw)
>> File "/data/soft/ccpnmr/ccpnmr2.4/python/ccp/format/spectra/params/ExternalParams.py", line 103, in __init__
>> self.makeNewParams()
>> File "/data/soft/ccpnmr/ccpnmr2.4/python/ccp/format/spectra/params/ExternalParams.py", line 170, in makeNewParams
>> self.parseFile()
>> File "/data/soft/ccpnmr/ccpnmr2.4/python/ccp/format/spectra/params/BrukerParams.py", line 114, in parseFile
>> acqParData.get()
>> File "/data/soft/ccpnmr/ccpnmr2.4/python/ccp/format/bruker/acqParsIO.py", line 249, in get
>> self.process()
>> File "/data/soft/ccpnmr/ccpnmr2.4/python/ccp/format/bruker/acqParsIO.py", line 415, in process
>> self.processpre21()
>> File "/data/soft/ccpnmr/ccpnmr2.4/python/ccp/format/bruker/acqParsIO.py", line 664, in processpre21
>> (numPoints,numPointsOrig,valuePerPoint) = self.getFreqDimInfo(valuePerPoint,numPointsValid)
>> File "/data/soft/ccpnmr/ccpnmr2.4/python/ccp/format/general/acqParsDefs.py", line 180, in getFreqDimInfo
>> valppointFreq = (1 / valppoint) / npointsFreq
>> ZeroDivisionError: float division by zero
>>
>> any clue how to resolve this issue ?
>> It is really annoying ...
>>
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