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FSL  June 2019

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Subject:

Re: FSLeyes 4D image renders incorrectly

From:

paul mccarthy <[log in to unmask]>

Reply-To:

FSL - FMRIB's Software Library <[log in to unmask]>

Date:

Sat, 29 Jun 2019 13:20:21 +0930

Content-Type:

text/plain

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text/plain (105 lines)

Hi Dianne,

There is a problem with my macOS build machine which I am currently
fixing. The FSLeyes 0.30.0 builds will hopefully be available in the
next 24 hours.

Thanks,

Paul

On 29/06/2019, Dianne Patterson <[log in to unmask]> wrote:
> Hi,
> It looks like only version 0.29.0 is available on the temporary download
> site...
> When might 0.30.0 be available?
>
> Thank you,
>
> Dianne
>
> On Fri, Jun 28, 2019 at 6:27 PM paul mccarthy <[log in to unmask]>
> wrote:
>
>> Hi Steven,
>>
>> This bug should be fixed in a more recent version of FSLeyes - you can
>> download the latest version from:
>>
>> https://users.fmrib.ox.ac.uk/~paulmc/fsleyes/dist/
>>
>> Cheers,
>>
>> Paul
>>
>> On 29/06/2019, Steven Ufkes <[log in to unmask]> wrote:
>> > I am having an issue displaying a 4D image in fsleyes. The image was
>> > generated by following the instructions in FSL's TBSS tutorial
>> > (https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/TBSS/UserGuide). The image is a
>> > number of 3D FA images for each subject in a study, combined in one
>> image.
>> > Each volume should be the FA image for a single subject.
>> >
>> > When I view this image in fslview or MNI Display, the volumes display
>> > correctly: each volume is a distinct FA image. When I view the image in
>> > fsleyes, each volume looks almost identical, except that a few slices
>> > in
>> > each volume are messed up (different slices in different volumes). When
>> > I
>> > ask fsleyes to open at a specific volume using the -v option, each of
>> > the
>> > specified volumes initially displays correctly. Only after switching
>> between
>> > volumes in the fsleyes window does the slice-corruption/rendering issue
>> > occur.
>> >
>> > I have view many other images in fsleyes (3D and 4D), without this
>> issue. I
>> > have no idea why this image does not display correctly, and it seems to
>> be
>> > an issue with fsleyes rather than the image itself.
>> >
>> > Running FSLeyes 0.26.1 (fsl version 6), on MacOS 10.14.5.
>> >
>> > ########################################################################
>> >
>> > To unsubscribe from the FSL list, click the following link:
>> > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1
>> >
>>
>> ########################################################################
>>
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>>
>
>
> --
> Dianne Patterson, Ph.D.
> Research Scientist
> [log in to unmask] <[log in to unmask]>
> or
> [log in to unmask]
> University of Arizona
> Speech and Hearing Science 314
> 1131 E 2nd Street, Building #71
> (Just East of Harvill)
> ==============
> If you don't hear back from me (and you expected to),
> I blame the University's new SPAM filter.
> Please write to my gmail account.
> ==============
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> ==============
>
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