Hi Paige,
concat_bvars is a preprocessing step needed to prepare sub-cortical
segmentations for a group analysis.
I would recommend going through the FSL course material to familiarise
yourself with FSL - there is a good overview of the sub-cortical
analysis pipeline:
http://fsl.fmrib.ox.ac.uk/fslcourse/
http://fsl.fmrib.ox.ac.uk/fslcourse/lectures/practicals/seg_struc/index.html#first
Cheers,
Paul
On 04/06/2019, Paige Oden <[log in to unmask]> wrote:
> Hello! I am very new to fsl and I am stuck.
> First, I'm not entirely sure what the output of concat is meant to be, but
> it keeps coming out as a document that will not open. The command line I'm
> using is:
>
> concat_bvars c_to_p_to_pdi_R_Hipp.bvars MJF*C_first_R_Hipp.bvars
> MJF*P_first_R_Hipp.bvars MJF*PCI_first_R_Hipp.bvars
>
> Definitely not sure if that's what I'm supposed to be using, or if that's
> what's supposed to be happening, but that's what it is.
>
> Furthermore, when I try to load this concatenated file into my Higher Level
> GLM gui, it says that "This" is an invalid command. I don't know what to do
> about this because I don't know where 'This' is coming from.
>
> Thank you!
>
> ########################################################################
>
> To unsubscribe from the FSL list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1
>
########################################################################
To unsubscribe from the FSL list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1
|