Hi,
I'm having problems to configurate the Fix1.068.
When I try to install the R-package "party" from any mirror, I get an error message:
install_version("party", version="1.0-25")
Downloading package from url: https://cloud.r-project.org/src/contrib/Archive/party/party_1.0-25.tar.gz
Installing party
tentando a URL 'https://cloud.r-project.org/src/contrib/coin_1.2-2.tar.gz'
Content type 'application/x-gzip' length 1068117 bytes (1.0 MB)
==================================================
downloaded 1.0 MB
Installing coin
tentando a URL 'https://cloud.r-project.org/src/contrib/multcomp_1.4-10.tar.gz'
Content type 'application/x-gzip' length 603161 bytes (589 KB)
==================================================
downloaded 589 KB
Installing multcomp
tentando a URL 'https://cloud.r-project.org/src/contrib/sandwich_2.5-0.tar.gz'
Content type 'application/x-gzip' length 1376950 bytes (1.3 MB)
==================================================
downloaded 1.3 MB
Installing sandwich
tentando a URL 'https://cloud.r-project.org/src/contrib/zoo_1.8-4.tar.gz'
Content type 'application/x-gzip' length 856279 bytes (836 KB)
==================================================
downloaded 836 KB
Installing zoo
tentando a URL 'https://cloud.r-project.org/src/contrib/lattice_0.20-38.tar.gz'
Content type 'application/x-gzip' length 359031 bytes (350 KB)
==================================================
downloaded 350 KB
Installing lattice
'/Applications/fsl/fslpython/envs/fslpython/lib/R/bin/R' --no-site-file \
--no-environ --no-save --no-restore --quiet CMD INSTALL \
'/private/var/folders/yy/3rnn7dsj0kg2s5czwb1_r6v40000gn/T/Rtmpur8VFb/devtools2be7de44491/lattice' \
--library='/Applications/fsl/fslpython/envs/fslpython/lib/R/library' \
--install-tests
* installing *source* package ‘lattice’ ...
** package ‘lattice’ successfully unpacked and MD5 sums checked
** libs
x86_64-apple-darwin13.4.0-clang -I/Applications/fsl/fslpython/envs/fslpython/lib/R/include -DNDEBUG -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Applications/fsl/fslpython/envs/fslpython/include -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -I/Applications/fsl/fslpython/envs/fslpython/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c init.c -o init.o
make: x86_64-apple-darwin13.4.0-clang: No such file or directory
make: *** [init.o] Error 1
ERROR: compilation failed for package ‘lattice’
* removing ‘/Applications/fsl/fslpython/envs/fslpython/lib/R/library/lattice’
* restoring previous ‘/Applications/fsl/fslpython/envs/fslpython/lib/R/library/lattice’
Installation failed: Command failed (1)
'/Applications/fsl/fslpython/envs/fslpython/lib/R/bin/R' --no-site-file \
--no-environ --no-save --no-restore --quiet CMD INSTALL \
'/private/var/folders/yy/3rnn7dsj0kg2s5czwb1_r6v40000gn/T/Rtmpur8VFb/devtools2be1d52e320/zoo' \
--library='/Applications/fsl/fslpython/envs/fslpython/lib/R/library' \
--install-tests
* installing *source* package ‘zoo’ ...
** package ‘zoo’ successfully unpacked and MD5 sums checked
** libs
x86_64-apple-darwin13.4.0-clang -I/Applications/fsl/fslpython/envs/fslpython/lib/R/include -DNDEBUG -I../inst/include -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Applications/fsl/fslpython/envs/fslpython/include -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -I/Applications/fsl/fslpython/envs/fslpython/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c coredata.c -o coredata.o
make: x86_64-apple-darwin13.4.0-clang: No such file or directory
make: *** [coredata.o] Error 1
ERROR: compilation failed for package ‘zoo’
* removing ‘/Applications/fsl/fslpython/envs/fslpython/lib/R/library/zoo’
Installation failed: Command failed (1)
'/Applications/fsl/fslpython/envs/fslpython/lib/R/bin/R' --no-site-file \
--no-environ --no-save --no-restore --quiet CMD INSTALL \
'/private/var/folders/yy/3rnn7dsj0kg2s5czwb1_r6v40000gn/T/Rtmpur8VFb/devtools2be594ac551/sandwich' \
--library='/Applications/fsl/fslpython/envs/fslpython/lib/R/library' \
--install-tests
ERROR: dependency ‘zoo’ is not available for package ‘sandwich’
* removing ‘/Applications/fsl/fslpython/envs/fslpython/lib/R/library/sandwich’
Installation failed: Command failed (1)
tentando a URL 'https://cloud.r-project.org/src/contrib/survival_2.43-3.tar.gz'
Content type 'application/x-gzip' length 4413954 bytes (4.2 MB)
==================================================
downloaded 4.2 MB
Installing survival
tentando a URL 'https://cloud.r-project.org/src/contrib/Matrix_1.2-15.tar.gz'
Content type 'application/x-gzip' length 1861654 bytes (1.8 MB)
==================================================
downloaded 1.8 MB
Installing Matrix
tentando a URL 'https://cloud.r-project.org/src/contrib/lattice_0.20-38.tar.gz'
Content type 'application/x-gzip' length 359031 bytes (350 KB)
==================================================
downloaded 350 KB
Skipping lattice, it is already being installed.
'/Applications/fsl/fslpython/envs/fslpython/lib/R/bin/R' --no-site-file \
--no-environ --no-save --no-restore --quiet CMD INSTALL \
'/private/var/folders/yy/3rnn7dsj0kg2s5czwb1_r6v40000gn/T/Rtmpur8VFb/devtools2be4fafb828/Matrix' \
--library='/Applications/fsl/fslpython/envs/fslpython/lib/R/library' \
--install-tests
* installing *source* package ‘Matrix’ ...
** package ‘Matrix’ successfully unpacked and MD5 sums checked
** libs
x86_64-apple-darwin13.4.0-clang -I/Applications/fsl/fslpython/envs/fslpython/lib/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Applications/fsl/fslpython/envs/fslpython/include -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -I/Applications/fsl/fslpython/envs/fslpython/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c CHMfactor.c -o CHMfactor.o
make: x86_64-apple-darwin13.4.0-clang: No such file or directory
make: *** [CHMfactor.o] Error 1
ERROR: compilation failed for package ‘Matrix’
* removing ‘/Applications/fsl/fslpython/envs/fslpython/lib/R/library/Matrix’
* restoring previous ‘/Applications/fsl/fslpython/envs/fslpython/lib/R/library/Matrix’
Installation failed: Command failed (1)
'/Applications/fsl/fslpython/envs/fslpython/lib/R/bin/R' --no-site-file \
--no-environ --no-save --no-restore --quiet CMD INSTALL \
'/private/var/folders/yy/3rnn7dsj0kg2s5czwb1_r6v40000gn/T/Rtmpur8VFb/devtools2be575664b0/survival' \
--library='/Applications/fsl/fslpython/envs/fslpython/lib/R/library' \
--install-tests
* installing *source* package ‘survival’ ...
** package ‘survival’ successfully unpacked and MD5 sums checked
** libs
x86_64-apple-darwin13.4.0-clang -I/Applications/fsl/fslpython/envs/fslpython/lib/R/include -DNDEBUG -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -I/Applications/fsl/fslpython/envs/fslpython/include -fPIC -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -I/Applications/fsl/fslpython/envs/fslpython/include -fdebug-prefix-map==/usr/local/src/conda/- -fdebug-prefix-map==/usr/local/src/conda-prefix -c agexact.c -o agexact.o
make: x86_64-apple-darwin13.4.0-clang: No such file or directory
make: *** [agexact.o] Error 1
ERROR: compilation failed for package ‘survival’
* removing ‘/Applications/fsl/fslpython/envs/fslpython/lib/R/library/survival’
* restoring previous ‘/Applications/fsl/fslpython/envs/fslpython/lib/R/library/survival’
Installation failed: Command failed (1)
'/Applications/fsl/fslpython/envs/fslpython/lib/R/bin/R' --no-site-file \
--no-environ --no-save --no-restore --quiet CMD INSTALL \
'/private/var/folders/yy/3rnn7dsj0kg2s5czwb1_r6v40000gn/T/Rtmpur8VFb/devtools2be6354e7f4/multcomp' \
--library='/Applications/fsl/fslpython/envs/fslpython/lib/R/library' \
--install-tests
ERROR: dependencies ‘mvtnorm’, ‘sandwich’ are not available for package ‘multcomp’
* removing ‘/Applications/fsl/fslpython/envs/fslpython/lib/R/library/multcomp’
Installation failed: Command failed (1)
tentando a URL 'https://cloud.r-project.org/src/contrib/survival_2.43-3.tar.gz'
Content type 'application/x-gzip' length 4413954 bytes (4.2 MB)
==================================================
downloaded 4.2 MB
Skipping survival, it is already being installed.
'/Applications/fsl/fslpython/envs/fslpython/lib/R/bin/R' --no-site-file \
--no-environ --no-save --no-restore --quiet CMD INSTALL \
'/private/var/folders/yy/3rnn7dsj0kg2s5czwb1_r6v40000gn/T/Rtmpur8VFb/devtools2be5f189924/coin' \
--library='/Applications/fsl/fslpython/envs/fslpython/lib/R/library' \
--install-tests
ERROR: dependencies ‘mvtnorm’, ‘multcomp’ are not available for package ‘coin’
* removing ‘/Applications/fsl/fslpython/envs/fslpython/lib/R/library/coin’
Installation failed: Command failed (1)
tentando a URL 'https://cloud.r-project.org/src/contrib/sandwich_2.5-0.tar.gz'
Content type 'application/x-gzip' length 1376950 bytes (1.3 MB)
==================================================
downloaded 1.3 MB
Skipping sandwich, it is already being installed.
tentando a URL 'https://cloud.r-project.org/src/contrib/strucchange_1.5-1.tar.gz'
Content type 'application/x-gzip' length 542552 bytes (529 KB)
==================================================
downloaded 529 KB
Installing strucchange
tentando a URL 'https://cloud.r-project.org/src/contrib/sandwich_2.5-0.tar.gz'
Content type 'application/x-gzip' length 1376950 bytes (1.3 MB)
==================================================
downloaded 1.3 MB
Skipping sandwich, it is already being installed.
tentando a URL 'https://cloud.r-project.org/src/contrib/zoo_1.8-4.tar.gz'
Content type 'application/x-gzip' length 856279 bytes (836 KB)
==================================================
downloaded 836 KB
Skipping zoo, it is already being installed.
'/Applications/fsl/fslpython/envs/fslpython/lib/R/bin/R' --no-site-file \
--no-environ --no-save --no-restore --quiet CMD INSTALL \
'/private/var/folders/yy/3rnn7dsj0kg2s5czwb1_r6v40000gn/T/Rtmpur8VFb/devtools2be51457806/strucchange' \
--library='/Applications/fsl/fslpython/envs/fslpython/lib/R/library' \
--install-tests
ERROR: dependencies ‘zoo’, ‘sandwich’ are not available for package ‘strucchange’
* removing ‘/Applications/fsl/fslpython/envs/fslpython/lib/R/library/strucchange’
Installation failed: Command failed (1)
tentando a URL 'https://cloud.r-project.org/src/contrib/survival_2.43-3.tar.gz'
Content type 'application/x-gzip' length 4413954 bytes (4.2 MB)
==================================================
downloaded 4.2 MB
Skipping survival, it is already being installed.
tentando a URL 'https://cloud.r-project.org/src/contrib/zoo_1.8-4.tar.gz'
Content type 'application/x-gzip' length 856279 bytes (836 KB)
==================================================
downloaded 836 KB
Skipping zoo, it is already being installed.
'/Applications/fsl/fslpython/envs/fslpython/lib/R/bin/R' --no-site-file \
--no-environ --no-save --no-restore --quiet CMD INSTALL \
'/private/var/folders/yy/3rnn7dsj0kg2s5czwb1_r6v40000gn/T/Rtmpur8VFb/devtools2be39fc57ca/party' \
--library='/Applications/fsl/fslpython/envs/fslpython/lib/R/library' \
--install-tests
ERROR: dependencies ‘mvtnorm’, ‘strucchange’, ‘coin’, ‘zoo’, ‘sandwich’ are not available for package ‘party’
* removing ‘/Applications/fsl/fslpython/envs/fslpython/lib/R/library/party’
Installation failed: Command failed (1)
> search()
[1] ".GlobalEnv" "package:devtools" "package:stats"
[4] "package:graphics" "package:grDevices" "package:utils"
[7] "package:datasets" "package:methods" "Autoloads"
[10] "package:base"
Thank you.
Helka
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