Hi FSL experts,
When I using the PLAM to do the permutation test. The input file are xxx.shape.gii files. I used palm -i xxx.shape.gii to input the file. But there some error about read_gifti_file.m
*detailed error*
[guoyuan@cmr-r930 permutation]$ sh permunation_metric.sh
warning: docstring file '/usr/share/octave/3.8.2/etc/built-in-docstrings' not found
=======================================================================
___ ___ ___
/ /\ / /\ /__/\
/ /::\ / /::\ | |::\
/ /:/\:\ / /:/\:\ ___ ___ | |:|:\
/ /:/~/:/ / /:/~/::\ /__/\ / /\ __|__|:|\:\
/__/:/ /:/ /__/:/ /:/\:\ \ \:\ / /:/ /__/::::| \:\
\ \:\/:/ \ \:\/:/__\/ \ \:\ /:/ \ \:\~~\__\/
\ \::/ \ \::/ \ \:\/:/ \ \:\
\ \:\ \ \:\ \ \::/ \ \:\
\ \:\ \ \:\ \__\/ \ \:\
\__\/ \__\/ \__\/
=======================================================================
Permutation Analysis of Linear Models
=======================================================================
Running PALM alpha115 using Octave 3.8.2 with the following options:
-i /guoyuan_data/make_template_surface/make_surface/a_output_chcp/output_template/iter_average/week1.iter4.curv.L.AVERAGE.shape.gii
Found FSL in /usr/local/fsl
Found FreeSurfer in /usr/local/freesurfer
Found HCP Workbench executable in /guoyuan_data/software/workbench/bin_linux64/wb_command
Reading input 1/1: /guoyuan_data/make_template_surface/make_surface/a_output_chcp/output_template/iter_average/week1.iter4.curv.L.AVERAGE.shape.gii
error: [GIFTI] Loading of XML file /guoyuan_data/make_template_surface/make_surface/a_output_chcp/output_template/iter_average/week1.iter4.curv.L.AVERAGE.shape.gii failed.
error: called from:
error: [log in to unmask] at line 17, column 5
error: [log in to unmask] at line 89, column 22
error: /guoyuan_data/software/palm-alpha115/palm_miscread.m at line 284, column 13
error: /guoyuan_data/software/palm-alpha115/palm_ready.m at line 47, column 10
error: /guoyuan_data/software/palm-alpha115/palm_takeargs.m at line 1644, column 72
error: /guoyuan_data/software/palm-alpha115/palm_core.m at line 33, column 11
error: /guoyuan_data/software/palm-alpha115/palm.m at line 81, column 1
Anyone can help me?
Best
Guoyuan
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