Dear Ariadna,
Bit of a mystery what happened there. Could it be that you use "Add with
subfolders" when adding Documents\MATLAB to the path and there are
conflicts with functions in subdirectories?
More crucially, why are you changing the default value of the threshold
stored in ufp? I can see a previous email of yours "error model
estimation" where you came across the "Please check your data: There are
no significant voxels." error message. You mention using a two-sample
t-test: what are the input data to this model?
Best regards,
Guillaume.
On 15/03/2019 11:27, Ariadna Albajara Sáenz wrote:
> It works now. It was not necessary to add the path, as you said.
> How can I be sure that my results are performed with that threshold?
> Since when I check the results using "Results" in the GUI the results
> are almost the same than with the previous threshold...
>
> Thank you in advance,
>
> *Ariadna Albajara Sáenz*
> [log in to unmask] <mailto:[log in to unmask]>_
> UR2NF - Neuropsychology and Functional Imaging Research Group
> CRCN - Center for Research in Cognition and Neurosciences
> http://crcn.ulb.ac.be/
> <https://eur01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fcrcn.ulb.ac.be%2F&data=02%7C01%7Cg.flandin%40ucl.ac.uk%7C85b6a9c163954dd1551008d6a93944e2%7C1faf88fea9984c5b93c9210a11d9a5c2%7C0%7C0%7C636882460773468255&sdata=IYHVez%2BqhSUImByUBSA%2Fk%2FZ2RdlNYO4kZXr2InfQl6A%3D&reserved=0>
> *
> *
> UNIVERSITÉ LIBRE DE BRUXELLES, Avenue F. Roosevelt 50, CP 151, 1050
> Brussels (Belgium).
> Office: DB10-237
>
>
> El vie., 15 mar. 2019 a las 12:12, Flandin, Guillaume
> (<[log in to unmask] <mailto:[log in to unmask]>>) escribió:
>
> Dear Ariadna,
>
> I was about to ask you whether "C:\Users\ULB\Documents\MATLAB\" was
> containing other files that might affect the behaviour of SPM but this
> directory is normally automatically added to the path by MATLAB.
> Would you confirm that if you delete spm_my_defaults.m and don't add the
> Documents\MATLAB directory to the path then everything goes back to
> normal?
>
> Best regards,
> Guillaume.
>
>
> On 15/03/2019 11:01, Ariadna Albajara Sáenz wrote:
> > Dear Guillaume,
> >
> > Thank you for your quick response.
> > No error message is displayed and the batch window stays empty...
> > I saved the 'spm_my_defaults.m' file in this folder:
> > "C:\Users\ULB\Documents\MATLAB\" and added this to my path but I
> guess
> > this is correct so I don't know where my problem comes from...
> >
> > Best,
> >
> > *Ariadna Albajara Sáenz*
> > [log in to unmask] <mailto:[log in to unmask]>
> <mailto:[log in to unmask] <mailto:[log in to unmask]>>_
> > UR2NF - Neuropsychology and Functional Imaging Research Group
> > CRCN - Center for Research in Cognition and Neurosciences
> > http://crcn.ulb.ac.be/
> <https://eur01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fcrcn.ulb.ac.be%2F&data=02%7C01%7Cg.flandin%40ucl.ac.uk%7C85b6a9c163954dd1551008d6a93944e2%7C1faf88fea9984c5b93c9210a11d9a5c2%7C0%7C0%7C636882460773468255&sdata=IYHVez%2BqhSUImByUBSA%2Fk%2FZ2RdlNYO4kZXr2InfQl6A%3D&reserved=0>
> >
> <https://eur01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fcrcn.ulb.ac.be%2F&data=02%7C01%7Cg.flandin%40ucl.ac.uk%7C9979fc65f64d4d3911bc08d6a935a0bb%7C1faf88fea9984c5b93c9210a11d9a5c2%7C0%7C0%7C636882445139833181&sdata=9pZbCKwPwwomw8qq%2BK1zt%2FYmzywkwncQ5%2F2E%2BuRIi1Y%3D&reserved=0
> <https://eur01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fcrcn.ulb.ac.be%2F&data=02%7C01%7Cg.flandin%40ucl.ac.uk%7C85b6a9c163954dd1551008d6a93944e2%7C1faf88fea9984c5b93c9210a11d9a5c2%7C0%7C0%7C636882460773478260&sdata=HPzvLgD8K6DhVHSHPvzbKDcszs4jFeBetTou%2BsHfQkg%3D&reserved=0>>
> > *
> > *
> > UNIVERSITÉ LIBRE DE BRUXELLES, Avenue F. Roosevelt 50, CP 151, 1050
> > Brussels (Belgium).
> > Office: DB10-237
> >
> >
> > El vie., 15 mar. 2019 a las 11:51, Flandin, Guillaume
> > (<[log in to unmask] <mailto:[log in to unmask]>
> <mailto:[log in to unmask] <mailto:[log in to unmask]>>>) escribió:
> >
> > Dear Ariadna,
> >
> > I don't see any problem in what you show, apart from the ugly
> display.
> > When you say you cannot open your batches any more, what do
> you exactly
> > mean? Is there any error message displayed?
> >
> > Best regards,
> > Guillaume.
> >
> >
> > On 15/03/2019 10:43, Ariadna Albajara Saenz wrote:
> > > Dear SPM experts,
> > >
> > > I have made some changes to the default values in SPM by
> creating
> > an "spm_my_defaults.m" file with two lines of code as previously
> > suggested in this forum:
> > > global defaults;
> > > defaults.stats.fmri.ufp = 0.05;
> > >
> > > When I open spm, MATLAB shows this:
> > > SPM12: v7487 11:38:37 -
> > 15/03/2019
> > >
> >
> ========================================================================
> > > Initialising SPM :
> > .Defaults settings have been modified by file(s):
> > > C:\Users\ULB\Documents\MATLAB\spm_my_defaults.m
> > > Modified fields: stats
> > > ......Defaults settings have been modified by file(s):
> > > C:\Users\ULB\Documents\MATLAB\spm_my_defaults.m
> > > Modified fields: stats
> > > .done
> > >
> > > SPM present working directory:
> > > C:\Users\ULB\Documents\MATLAB
> > >
> > >
> > > The problem is that I cannot open my batches anymore.
> > >
> > > Would anyone know how to solve this?
> > >
> > > Thank you in advance,
> > >
> > > Ariadna
> > >
> >
> > --
> > Guillaume Flandin, PhD
> > Wellcome Centre for Human Neuroimaging
> > UCL Queen Square Institute of Neurology
> > London WC1N 3BG
> >
>
> --
> Guillaume Flandin, PhD
> Wellcome Centre for Human Neuroimaging
> UCL Queen Square Institute of Neurology
> London WC1N 3BG
>
--
Guillaume Flandin, PhD
Wellcome Centre for Human Neuroimaging
UCL Queen Square Institute of Neurology
London WC1N 3BG
|
