Dear Jasper,
Apologies for the missing information. I have used the following eddy commands line:
eddy --imain=dti_base --mask=mask_hifi_mask --acqp=acqparams.txt --index=index.txt --bvecs=dti_base.bvec --bvals=dti_base.bval –-topup=my_topup_results --data_is_shelled --repol --out=eddy_corrected_data –-verbose
Please let me know if there is any other info you may need.
Thanks,
Ines
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