HI Mark,
After trying to perform "run first all" (FIRST tool) there were always the same problems with the "to_std_sub.nii.gz" outputs. Basically they look completely misaligned in all planes when overlayed with the MNI152_T1_1mm standard image. I guess I have to set up some specific configuration for the flirt step, but donĀ“t know how to do it.
I would be immensely grateful if you could help me solving this problem.
Looking forward to hearing from you and many thanks in advance,
Gilberto Sousa Alves
Federal University of Rio de Janeiro
Rio de janeiro - Brazil
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