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CCPEM  March 2019

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Subject:

Re: Relion stable version numbering

From:

Sjors Scheres <[log in to unmask]>

Reply-To:

Sjors Scheres <[log in to unmask]>

Date:

Tue, 5 Mar 2019 09:03:02 +0000

Content-Type:

text/plain

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text/plain (90 lines)

Dear Jose Miguel,
We do typically not renumber our release for relatively small bug fixes. 
Hope that does not cause too much trouble on your end.
Best regards,
Sjors


Jose Miguel de la Rosa Trevin wrote:
> Dear Relion developers,
>
> It is a great news to see the stable release 3.0, announced in this 
> list on Feb 15. Since then, there are several commits about a week ago 
> and another commit from yesterday. Usually, the master branch in the 
> repository hold the latest stable code. So, my question is, what is 
> the current version of Relion code in https://github.com/3dem/relion? 
> 3.0.2?, 3.0.1? 3.0 still?
>
> For the sake of reproducibility, I would suggest that each public 
> change in the stable repository should be associated with a unique 
> version number. Git allows to use "tags" that are easy to match to 
> releases of the code. For developers, maybe the git hash code can be 
> used to report bugs in development versions, but unique version 
> numbers are better when not using git (either binaries or just source 
> code).
>
> Kind regards,
> Jose Miguel
>
>
> On Fri, Feb 15, 2019 at 6:36 PM Sjors Scheres 
> <[log in to unmask] <mailto:[log in to unmask]>> wrote:
>
>     Dear EM-ers,
>
>     It's a pleasure to announce the stable release of relion-3.0. The 3.0
>     release has been in beta-testing since early Summer, and we are
>     grateful
>     to everyone who contributed to its improvement since. Apart from bug
>     fixes, the stable release also incorporates reading of mode 101
>     (4-bit)
>     MRC files, like serialEM and EPU write out.
>
>     We strongly recommend that you update your code. As the
>     beta-release was
>     hosted on bitbucket, you will need to make a new clone from github:
>
>     git clone https://github.com/3dem/relion
>
>     Please ask any questions about RELION through the ccp-em list, and
>     make
>     sure you are using the latest version before reporting problems.
>
>     Have fun,
>
>     The RELION development team:
>
>     Bjorn Forsberg (SciLifeLab)
>     Dari Kimanius (SciLifeLab)
>     Erik Lindahl (SciLifeLab)
>     Takanori Nakane (MRC-LMB)
>     Jasenko Zivanov (MRC-LMB, now at the Biozentrum in Basel)
>     Sjors Scheres (MRC-LMB)
>
>     -- 
>     Sjors Scheres
>     MRC Laboratory of Molecular Biology
>     Francis Crick Avenue, Cambridge Biomedical Campus
>     Cambridge CB2 0QH, U.K.
>     tel: +44 (0)1223 267061
>     http://www2.mrc-lmb.cam.ac.uk/groups/scheres
>
>     ########################################################################
>
>     To unsubscribe from the CCPEM list, click the following link:
>     https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCPEM&A=1
>

-- 
Sjors Scheres
MRC Laboratory of Molecular Biology
Francis Crick Avenue, Cambridge Biomedical Campus
Cambridge CB2 0QH, U.K.
tel: +44 (0)1223 267061
http://www2.mrc-lmb.cam.ac.uk/groups/scheres

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