Hi,
Please try the latest version (3.0.2).
This issue was fixed last December.
If it still persists, please let me know.
rlnBeamTiltGroupName is no longer in use.
Use rlnBeamTiltClass. Large numbers should work
but not tested. I recommend 1, 2, 3, ...
Best regards,
Takanori Nakane
On 2019/03/17 8:55, Mazdak Radjainia wrote:
> Hi all/Takanori,
>
> I have a script that puts EPU's template position ID (2nd 8-digit number in
> filenames) as _rlnBeamTiltClass column for grouping by beam shift. No
> complaints about unknown metalabel but the column/grouping is lost, no
> matter if I extract from autopick coordinates or re-extract from
> run_data.star. I also tried changing column name to _rlnBeamTiltGroupName
> as well as with single digit numbers (1,2,3). Still no luck.
>
> *micrographs.star <http://micrographs.star/>:*
>
> # RELION; version 3.0-beta-2
>
> data_
>
> loop_
> _rlnMicrographName #1
> _rlnCtfImage #2
> _rlnDefocusU #3
> _rlnDefocusV #4
> _rlnDefocusAngle #5
> _rlnVoltage #6
> _rlnSphericalAberration #7
> _rlnAmplitudeContrast #8
> _rlnMagnification #9
> _rlnDetectorPixelSize #10
> _rlnCtfFigureOfMerit #11
> _rlnCtfMaxResolution #12
> *_rlnBeamTiltClass* #13
> micrographs_mc2/20190314_112756_DW.mrc
> CtfFind/job006/micrographs_mc2/20190314_112756.ctf:mrc 12763.420000
> 15302.010000 62.230000 200.000000 2.700000 0.070000 1.590436e+05 14.000000
> 0.
> 104969 3.383972 *13702091 *
>
> *particles.star <http://particles.star/>*
>
> data_
>
> loop_
> _rlnCoordinateX #1
> _rlnCoordinateY #2
> _rlnClassNumber #3
> _rlnAnglePsi #4
> _rlnAutopickFigureOfMerit #5
> _rlnImageName #6
> _rlnMicrographName #7
> _rlnMagnification #8
> _rlnDetectorPixelSize #9
> _rlnCtfMaxResolution #10
> _rlnCtfFigureOfMerit #11
> _rlnVoltage #12
> _rlnDefocusU #13
> _rlnDefocusV #14
> _rlnDefocusAngle #15
> _rlnSphericalAberration #16
> _rlnCtfBfactor #17
> _rlnCtfScalefactor #18
> _rlnPhaseShift #19
> _rlnAmplitudeContrast #20
> _rlnGroupNumber #21
> _rlnAngleRot #22
> _rlnAngleTilt #23
> _rlnOriginX #24
> _rlnOriginY #25
> _rlnNormCorrection #26
> _rlnLogLikeliContribution #27
> _rlnMaxValueProbDistribution #28
> _rlnNrOfSignificantSamples #29
> _rlnRandomSubset #30
> 342.500000 4014.000000 1 78.562716 -999.00000
> [log in to unmask]
> micrographs_mc2/20190314_112756_DW.mrc 1.590436 <+11590436>e+05 14.000000
> 3.383972
> 0.104969 200.000000 12763.420000 15302.010000 62.230000 2.700000 0.000000
> 1.000000 0.000000 0.070000 8 60.960805 29.200486 -3.65219 -20.27769 0.61
> 1210 2.996263 <+12102996263>e+05 0.047079 54 1
> 1449.000000 4020.500000 1 -153.94476 -999.00000
> [log in to unmask]
> micrographs_mc2/20190314_112756_DW.mrc 1.590436 <+11590436>e+05 14.000000
> 3.383972
> 0.104969 200.000000 12763.420000 15302.010000 62.230000 2.700000 0.000000
> 1.000000 0.000000 0.070000 8 82.249956 41.080753 -7.90319 -6.65219 0.62
> 8633 2.927894e+05 0.057121 42 1
> 1752.500000 4004.500000 1 -33.92918 -999.00000
> [log in to unmask]
> micrographs_mc2/20190314_112756_DW.mrc 1.590436 <+11590436>e+05 14.000000
> 3.383972
> 0.104969 200.000000 12763.420000 15302.010000 62.230000 2.700000 0.000000
> 1.000000 0.000000 0.070000 8 98.885417 28.052106 0.347810 -9.27769 0.62
> 0377 2.934522e+05 0.055249 30 1
>
> Appreciate the help!
>
> cheers
> mzdk
>
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