Hi Dieter,
I am not aware of the function in chimera that you alluded to, but I
have had a similar question and used an FSC based metric to determine
the similarity among my 3d classes. I achieve that using combination
of awk and e2proc3d.py --calcfsc.
Cheers,
Pranav
--
Pranav Shah
Postdoctoral Research Fellow.
Hogle Lab
Department of Biological Chemistry and Molecular Pharmacology,
Building C2 - First Floor
240 Longwood Avenue
Boston, MA 02115
(617) 432-4360 (fax)
(617) 432-3839 (lab)
On Sun, Mar 31, 2019 at 4:21 PM Dieter Blaas
<[log in to unmask]> wrote:
>
> Dear colleagues,
>
> can somebody please give me a hint of how to calculate the
> correlation between two maps obtained in a Class3D run in relion,
> something like Chimera outputs when aligning volumes. I'd like to see
> how the separation of two maps evolves during the iterations by using
> the command line. I'd prefer a relion or xmipp command...
>
> thanks, bw Dieter
>
> ------------------------------------------------------------------------
> Dieter Blaas,
> Max F. Perutz Laboratories
> Medical University of Vienna,
> Inst. Med. Biochem., Vienna Biocenter (VBC),
> Dr. Bohr Gasse 9/3,
> A-1030 Vienna, Austria,
> Tel: 0043 1 4277 61630,
> Fax: 0043 1 4277 9616,
> e-mail: [log in to unmask]
> ------------------------------------------------------------------------
>
> ########################################################################
>
> To unsubscribe from the CCPEM list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCPEM&A=1
########################################################################
To unsubscribe from the CCPEM list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCPEM&A=1
|