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CCPEM  March 2019

CCPEM March 2019

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Subject:

Re: Relion stable version numbering

From:

Takanori Nakane <[log in to unmask]>

Reply-To:

Takanori Nakane <[log in to unmask]>

Date:

Tue, 5 Mar 2019 08:28:06 +0000

Content-Type:

text/plain

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text/plain (86 lines)

Hi,

Indeed commit 600499f is tagged as 3.0.

Later commits are small bug fixes and only those who are
affected need to upgrade.

Best regards,

Takanori Nakane

On 2019/03/05 8:19, Jose Miguel de la Rosa Trevin wrote:
> Dear Relion developers,
> 
> It is a great news to see the stable release 3.0, announced in this list on
> Feb 15. Since then, there are several commits about a week ago and another
> commit from yesterday. Usually, the master branch in the repository hold
> the latest stable code. So, my question is, what is the current version of
> Relion code in  https://github.com/3dem/relion? 3.0.2?, 3.0.1? 3.0 still?
> 
> For the sake of reproducibility, I would suggest that each public change in
> the stable repository should be associated with a unique version number.
> Git allows to use "tags" that are easy to match to releases of the code.
> For developers, maybe the git hash code can be used to report bugs in
> development versions, but unique version numbers are better when not using
> git (either binaries or just source code).
> 
> Kind regards,
> Jose Miguel
> 
> 
> On Fri, Feb 15, 2019 at 6:36 PM Sjors Scheres <[log in to unmask]>
> wrote:
> 
>> Dear EM-ers,
>>
>> It's a pleasure to announce the stable release of relion-3.0. The 3.0
>> release has been in beta-testing since early Summer, and we are grateful
>> to everyone who contributed to its improvement since. Apart from bug
>> fixes, the stable release also incorporates reading of mode 101 (4-bit)
>> MRC files, like serialEM and EPU write out.
>>
>> We strongly recommend that you update your code. As the beta-release was
>> hosted on bitbucket, you will need to make a new clone from github:
>>
>> git clone https://github.com/3dem/relion
>>
>> Please ask any questions about RELION through the ccp-em list, and make
>> sure you are using the latest version before reporting problems.
>>
>> Have fun,
>>
>> The RELION development team:
>>
>> Bjorn Forsberg (SciLifeLab)
>> Dari Kimanius (SciLifeLab)
>> Erik Lindahl (SciLifeLab)
>> Takanori Nakane (MRC-LMB)
>> Jasenko Zivanov (MRC-LMB, now at the Biozentrum in Basel)
>> Sjors Scheres (MRC-LMB)
>>
>> --
>> Sjors Scheres
>> MRC Laboratory of Molecular Biology
>> Francis Crick Avenue, Cambridge Biomedical Campus
>> Cambridge CB2 0QH, U.K.
>> tel: +44 (0)1223 267061
>> http://www2.mrc-lmb.cam.ac.uk/groups/scheres
>>
>> ########################################################################
>>
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