Hi Matthew,
Thank you for catching that! When I run bet in advance with the -F -f 0.05 options FEAT runs perfectly. Registration and the resultant mask.nii.gz files look great!
I notice minor differences in the z-stat images (although they are largely overlapping) comparing the results for a single subject (bet before FEAT vs. bet within FEAT), and some very minor differences in motion parameter estimates (one hundreth of a mm). I imagine these won't impact group level analyses but just wanted to confirm that.
Thanks again (I was stuck on this for a while),
Paul
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