Hi Zhang,
Try running:
sudo /usr/share/fsl/5.0/etc/fslconf/fslpython_install.sh -f $FSLDIR
Cheers,
Paul
On 27/12/2018, 张婧文 <[log in to unmask]> wrote:
> hello!
> Thanks for your advice!
> I checked:
>
>
> zhangjingwen@ubuntu:~$ sudo ls -al
> /usr/share/fsl/5.0/etc/fslconf/fslpython_install.sh
> [sudo] password for zhangjingwen:
> -rwxr-xr-x 1 root root 5413 3月 19 2018
> /usr/share/fsl/5.0/etc/fslconf/fslpython_install.sh
> zhangjingwen@ubuntu:~$ sudo
> /usr/share/fsl/5.0/etc/fslconf/fslpython_install.sh
> Error - FSLDIR not given as an argument and $FSLDIR not set!
>
> I don't know how to do with this again. Can you help me?
> thank you very much!
>
>
>
>
> On 12/27/2018 05:37,Tim Schäfer<[log in to unmask]> wrote:
> I do not know about BIANCA, but that error message says that fslpython is
> not setup properly.
>
> Did you install it as described in the docs at
> https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup?
>
> If so, maybe all you have to do is to open a new shell. If not, you will
> have to install it.
>
> This may not solve the rest of the problem, but it will definitely get you a
> step into the right direction.
>
> Tim
>
> On December 26, 2018 at 5:11 PM Zhang Jingwen <[log in to unmask]> wrote:
>
>
> hello,FSL experts and users,
> I would like to use BIANCA on FSL5.0.11.
> After I installed the fsl, I can't open the bianca.( during the process of
> installing, everything is okay)
>
> zhangjingwen@ubuntu:~$ /usr/share/fsl/5.0/bin/bianca
> /usr/bin/env: fslpython: No such file or directory
>
> In the directory of fsl, I did not find the executable file of bianca, but
> there are something related:bianca(plain text document);
> bianca_cluster_stats(shell script);bianca_overlap_measures(shell script)
> Why does this? and what should I do?
>
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>
> --
> Dr. Tim Schäfer
> Postdoc Computational Neuroimaging
> Department of Child and Adolescent Psychiatry, Psychosomatics and
> Psychotherapy
> University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany
>
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