Dear Carlotta,
You need to give us some more details about what you have at hand and
what exactly you would want to extract (and for what purpose). I noticed
your other recent posts on the FSL and NITRC mailing lists (also
mentioning BrainVoyager) but I still don't have a clear picture.
As Remi mentions, the easiest for you would be to perform the
statistical inference (model specification/estimation) within SPM but I
understand you only have one statistical image (t/F?) as a NIfTI file.
If that's the case, we could write a small script that would output a
list of peaks and clusters above a given height threshold as well as
labels corresponding to an atlas (if your data are spatially
normalised). (corrected) p-values are out of reach because we need more
information (degrees of freedom, RESEL counts). I guess it would be the
same than what xjView and FSL can also readily provide.
Best regards,
Guillaume.
On 13/12/2018 10:35, Carlotta Fabris wrote:
> Hi there!
>
> I tried different appraoches to get the tables: AAL, but I can't read .nii files, xjView but it doesn't get me all the things I need in the tables, FSL cluster command, but again it only has some of the things I need (p-peaks are not present, neither region names).
>
> Could you help me with this?
>
> Thank you a lot,
> Carlotta.
>
--
Guillaume Flandin, PhD
Wellcome Centre for Human Neuroimaging
UCL Queen Square Institute of Neurology
London WC1N 3BG
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