On 05/12/2018 00:44, Jungwook Kim wrote:
> I am about to refine a structure containing an N-terminal pyruvoyl residue (naturally derived from serine),
> which is commonly seen in many decarboxylases.
File -> Get Monomer -> PYR
Edit -> Merge Molecules -> [Merge the PYR molecule into your protein molecule]
Renumber the PYR residue and change the chain-id as needed
Extensions -> Modules -> CCP4 -> CCP4 -> Make a Link via Acedrg
Delete Atom: O2 -> Pick 2 Atoms -> Click on C1 of PYR and N of your N-terminal residue [*]
This will generate a dictionary that should be usable in Refmac and Coot.
Paul.
[*] I am guessing that this is the link that you want to make, I didn't look it up :-)
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