Reposting.
while running eddy on a few of my samples, I get a segmentation violation
[niklasl@localhost test]$ ./preproc_eddy3T.txt
Reading images
Performing volume-to-volume registration
Running Register
Loading prediction maker
Evaluating prediction maker model
Segmentation violation, Address not mapped, Offending address = 0x770000006e
/lib64/libc.so.6 [0x7ff023f2b3c1]
eddy ) [0x6062eb] [
eddy ) [0x5ff163] [
eddy ) [0x45fab5] [K�
./preproc_eddy3T.txt: line 4: 21758 Segmentation fault (core dumped) eddy --imain="${katalog}_DTI.nii" --mask="${katalog}_DTI_brain_mask.nii.gz" --acqp="${katalog}_DTI_acqparam.txt" --index="${katalog}_DTI_index.txt" --bvecs="${katalog}_DTI.bvec" --bvals="${katalog}_DTI.bval" --out="${katalog}_DTI_corr" --slm=linear --repol --niter=5 --fwhm=10,0,0,0,0 -v
does anyone have an idea? It happens only on a few cases. the rest works fine. have opened them in fsleys and I think they look no worse than other samples.
best
nick
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