Hi Liangqiong,
Can you please share the command that you used, and the error that you
got when you tried to extract the .nii.gz file?
Cheers,
Paul
On 27/11/2018, QU Liangqiong <[log in to unmask]> wrote:
> Dear FSL experts,
>
>
> Recently, I have installed FSL6.0 on my computer (Ubuntu16.04). All the
> installation went well, and I can open fsl in the terminal. The echo
> $FSLDIR returns /usr/local/fsl. The flirt -version displays FLIRT
> version 6.0.
>
> But when I used fsl do some mr image pre-processing, i.e., skull-strip or
> image registration. The output file seems weird.
>
> For example: an original 10M T1 images after skull-strip resulted in an
> output file with size only 8.7kb. When I open the output file, it is all
> dark, nothing in it. BTW, an error occured while I extract the *nii.gz
> output files.
>
> This is not due to the wrong parameter settings, since the same image files
> and parameters settings on my colleagues's computer work well.
>
> Except the skull-strip, all the others' image processing in FSL also results
> in empty output.
>
>
> I have uinstall the fsl, and installed it again. But the same situation
> still occurs in my computer.
>
>
> Could you give me some advice on this?
>
> I am looking forward for your feedback.
>
>
> Best regards,
>
> Liangqiong
>
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