Hi FSL experts,
I ran the whole tbss pipeline. All finished without (apparent) error.
However, my all_FA_skeletonise hat holes in it.
Doing a more thorough QC, I found:
QC after tbss_1_preproc -> was fine
QC after tbss_2_reg -> some of the brains were distorted
I checked the dti_FA.nii.gz images of the affected subjects but they look okay; same is true for these images after running through tbss_1_preproc.
I'm running tbss_2_reg again... but this might result in the same.
Any idea what else I could try or why this error is happening?
I would be grateful for some ideas!
Cheers,
Steph
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