Dear Vicky,
I have not looked at NMR structures lately but what is much more
helpful than the pdb validation tool is Molprobity
http://molprobity.biochem.duke.edu/. We use it a lot in
crystallography to check 'the physics' and I think in this aspect it
should be helpful for NMR structures, too. I just noted it explicitly
mentions NMR structures as well
http://molprobity.biochem.duke.edu/index.php?MolProbSID=qvjlatk5dff42n81kk6m2rge93&eventID=17
so I guess it should be able to deal with ensembles.
I'd be interested to know which websites or tools you find useful in the end!
Best wishes,
Bärbel
Zitat von Victoria Higman-Davies <[log in to unmask]>:
> Hello,
>
>
> I'm struggling to find a functional NMR structure Validation server.
>
>
> Running CING direct from Analysis gives me the following error:
>
> Connection to server URL
> https://nmr.le.ac.uk/icing/icing/serv/iCingServlet failed with reason:
>
> [SSL:SSLV3_ALERT_HANDSHAKE_FAILURE] sslv3 alert handshake failure
> (_ssl.c:581)
>
>
> Is this likely to be a problem at my end or the CING end?
>
>
> Going to the iCing website doesn't seem to work either.
>
> And the PSVS website also seems to be down.
>
>
> How are other people validating their structures at the moment? I
> tried the PDB validation server, but the report is not very helpful.
> Do I need to start installing Procheck etc. locally?
>
>
> Thanks,
>
>
> Vicky
>
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--
Bärbel Blaum, Ph.D.
Interfakultäres Institut für Biochemie (IFIB)
Hoppe-Seyler-Strasse 4
D-72076 Tübingen
Germany
+49 70 71 29 733 48
Raum 311
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