Hi Daniel,
FSLeyes has a different command-line interface to FSLView. Change the
command to:
fsleyes all_FA -dr 0 0.8 mean_FA_skeleton -dr 0.2 0.8 -cm Green
Cheers,
Paul
On Thu, 11 Oct 2018 at 20:12, Daniel Callow <[log in to unmask]> wrote:
> When using the TBSS?UserGuide and trying to run
>
> cd stats
> fslview all_FA -b 0,0.8 mean_FA_skeleton -b 0.2,0.8 -l Green
>
> to check my data I get this.
>
> Fslview is now deprecated, please type:
>
> fsleyes
>
> to launch our great new image viewer, or type:
>
> fslview_deprecated
>
> to launch the old fslview
>
> When I use the same code using fsleyes instead I get
>
> fsleyes all_FA -b 0,0.8 mean_FA_skeleton -b 0.2,0.8 -l Green
> argument -b/--brightness: invalid float value: '0,0.8'
> FSLeyes version 0.26.1
> Usage: fsleyes [options] file [displayOpts] file [displayOpts] ...
> Options for 'volume' overlays
> [-n NAME] [-d] [-a PERC] [-b PERC] [-c PERC] [-ll] [-lh] [-or LO
> HI]
> [-un] [-dr LO HI] [-cr LO HI] [-g REAL] [-ic] [-cm CMAP] [-nc CMAP]
> [-cmr INT] [-in {none,linear,spline}] [-inc] [-i] [-ns INT] [-bf
> REAL]
> [-s INT] [-r INT] [-nis INT] [-m {intersection,union,complement}]
> [-v INT] [-dt DITHERING] [-cp POS AZI INC] [-cl FILE]
>
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