when running this script
#!/bin/tcsh
@ linenum = 1
cd /Volumes/DANIEL/dti_FDT_FA
tbss_3_postreg -S
I get this output....
using pre-chosen target for registration
affine-registering target to MNI152 space
transforming (and upsampling) all FA images into MNI152 space
AES101.Ex.dti_FDT_FA__FA
Image Exception : #22 :: ERROR: Could not open image AES101.Ex.dti_FDT_FA__FA_to_target_warp
An error occured while reading file: AES101.Ex.dti_FDT_FA__FA_to_target_warp
AES101.Rest.dti_FDT_FA__FA
Image Exception : #22 :: ERROR: Could not open image AES101.Rest.dti_FDT_FA__FA_to_target_warp
An error occured while reading file: AES101.Rest.dti_FDT_FA__FA_to_target_warp
AES102.Ex.dti_FDT_FA__FA
Image Exception : #22 :: ERROR: Could not open image AES102.Ex.dti_FDT_FA__FA_to_target_warp
An error occured while reading file: AES102.Ex.dti_FDT_FA__FA_to_target_warp
AES102.Rest.dti_FDT_FA__FA
and so on for each image. Finally I get this output.
merging all upsampled FA images into single 4D image
creating valid mask and mean FA
skeletonising mean FA
now view mean_FA_skeleton to check whether the default threshold of 0.2 needs changing, when running:
tbss_4_prestats <threshold>
What is causing the errors? Why is it unable to run the files I created from tbss_2_reg -n?
Thank you for any advice you can provide!
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