Hi Moises,
Thank you very much for you help. But I did not find the output extra files. Is there something wrong with my scripts? Is the position where I put the --pd wrong?
/usr/local/fsl/bin/probtrackx2 \
--network -x ${save_path}/targets_Power.txt \
-l -c 0.2 -S 2000 \
--steplength=0.5 -P 5000 \
--pd \
--xfm=${pathproc}/${subject}/data_${method}.bedpostX/xfms/standard2diff.mat \
--forcedir --opd -s ${bpx_path}/merged \
-m ${bpx_path}/nodif_brain_mask \
--dir=${save_path} \
--avoid=/cbis/projects/brain/R01DPS/analysis/templates/CSF.nii \
--omatrix1
Thank you very much.
Sincerely,
Yingtian
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