Dear Daniel,
On Tue, 14 Aug 2018 00:43:21 +0100, Daniel Berge <[log in to unmask]> wrote:
>How?
> I cannot see more options in the expert mode than in the regular mode. Am I missing something?
The expert options mainly appear in "Segment Data" for the preprocessing part. There are only a few more GUI options available in expert mode.
> I Basically, I would like to combine some of the ROIs in the surface atlas, and I guess that the easiest way is to get the atlas in subject space and then combine the ROIS with marsbars or any other tool, to finally use this as a mask.
This will not be that easy for surface atlases. You can try use the function cat_io_FreeSurfer that that allows to load and save annotation files (Freesurfer files with atlas information). However, the use of the surface atlases is sometimes hardcoded in CAT12 and therefore the potential options are limited. The easiest way would be probably to use the mentioned function to create a mask that can be used with the resampled data.
Best,
Christian
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> Note: Thanks for this such a great tool!!
>
>Dani
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