Dear Yann,

sometimes data with high in-plane resolution (e.g. 0.5mm) and normal slice thickness cause difficulties if the data are affected by a large amount of noise. To make the data more isotropic an internal interpolation to 0.5x0.5x0.5mm^3 is used. You can try a change the internal resampling for preprocessing to "Fixed resolution [1 0.1]", which means that your data are resampled to approximately an isotropic size of 1mm^3. Even if this sounds counterintuitive to downsample your data, this will increase SNR and often helps and the 1mm resolution is usually a great tradeoff for many data.

Please also use the newest CAT12 version.

Best,

Christian

On Wed, 1 Aug 2018 14:51:30 +1000, Yann Quidé <[log in to unmask]> wrote:

>Dear Christian and other CAT12 users,
>
>I am using the CAT12.3 (v1318) toolbox with SPM12 (v6906) and Matlab r2013a on a MacPro (OSX 10.9.5; 32Go RAM, 2x2.4GHz 6-core). My scans were acquired on a 3T Siemens Magnetom Verio scanner (MPRAGE). 
>
>While I have processed 2 other batches of scans without any problem (different scanners: one batch was collected on Siemens Avanto 1.5T scanner; another on Philips 3T Achieva TX scanner), it takes longer to process (around 4 hours) than for the other scans (around 110-120 min/scan), and crashes almost at the end, using a LOT of memory (which did not happen with the 2 other batches of scan).
>
>Do you have any idea why and how I could solve this? 
>I have attached the log file with the details. Let me know if you need anything else.
>
>Thanks for your help.
>
>Yann
>
>
>
>
>
>                            < M A T L A B (R) >
>                  Copyright 1984-2013 The MathWorks, Inc.
>                     R2013a (8.1.0.604) 64-bit (maci64)
>                             February 15, 2013
>
> 
>To get started, type one of these: helpwin, helpdesk, or demo.
>For product information, visit www.mathworks.com.
> 
>CAT parallel processing with MATLAB PID: 15806
>
>------------------------------------------------------------------------
>CAT12.3 r1318: 1/1:      ./Subjects/T1/T01.nii
>------------------------------------------------------------------------
>SANLM denoising (NCstr=-Inf):                                       194s
>Internal resampling (0.50x0.50x1.00mm > 0.50x0.50x0.50mm):           16s
>APP: Rough bias correction:                                       
>  Initialize                                                         25s
>  Estimate background                                                16s
>  Initial correction                                                 35s
>  Refine background                                                  20s
>  Final correction                                                   29s
>  Background correction                                               3s
>  Final scaling                                                      35s
>                                                                    166s
>Coarse affine registration                                           26s
>Affine registration                                                  26s
>SPM preprocessing 1 (estimate):                                    1556s
>SPM preprocessing 2 (write):                                       1041s
>Global intensity correction:                                         49s
>SANLM noise correction:                                              56s
>Fast Shooting registration                                          184s
>Local adaptive segmentation (LASstr=0.50):                        
>  Prepare maps                                                       21s
>  Prepare partitions                                                  5s
>  Prepare segments (LASmod = 1.24)                                   44s
>  Estimate local tissue thresholds (WM)                              16s
>  Estimate local tissue thresholds (GM)                               9s
>  Estimate local tissue thresholds (CSF/BG)                          84s
>  Intensity transformation                                           72s
>  SANLM noise correction for LAS                                     39s
>                                                                    296s
>ROI segmentation (partitioning):                                  
>  Atlas -> subject space                                             60s
>  Major structures                                                    6s
>  Ventricle detection                                                 9s
>  Blood vessel detection                                              6s
>  Closing of deep structures                                          2s
>  Side alignment                                                      6s
>  Final corrections                                                  41s
>                                                                    130s
>Blood vessel correction (BVCstr=0.50):                               26s
>Amap using initial SPM12 segmentations (MRF filter strength 0.05):  286s
>    AMAP peaks: [CSF,GM,WM] = [0.47�0.05,0.68�0.08,0.96�0.04]
>Final cleanup (gcutstr=0.25):                                     
>  Level 1 cleanup (ROI estimation)                                   47s
>  Level 1 cleanup (brain masking)                                    27s
>  Level 2 cleanup (CSF correction)                                   13s
>  Level 3 cleanup (CSF/WM PVE)                                       22s
>                                                                    109s
>
>
>Dartel registration with 1.50 mm on a 1.50 mm Template:           
>  Template: "/Applications/SPM12/toolbox/cat12/templates_1.50mm/Template_1_IXI555_MNI152.nii"
>    1 | 0.1618 |   515150        0   515150  450.714 
>    2 | 0.1244 |   396169    38000   434170  218.175 
>    3 | 0.1243 |   395789    32665   428454   55.454 
>    4 | 0.1238 |   394167    17435   411602  211.392 
>    5 | 0.1127 |   358803    41215   400018   79.922 
>    6 | 0.1133 |   360714    38486   399200   49.150 
>    7 | 0.1131 |   360101    20122   380223  172.611 
>    8 | 0.1027 |   327117    41732   368848   68.410 
>    9 | 0.1030 |   328147    39620   367766   43.227 
>   10 | 0.1024 |   326085    20856   346942  148.514 
>   11 | 0.0922 |   293724    41441   335164   63.577 
>   12 | 0.0920 |   293059    40635   333695   44.816 
>   13 | 0.0917 |   292153    21536   313689  123.172 
>   14 | 0.0830 |   264203    38530   302733   61.066 
>   15 | 0.0822 |   261603    39395   300998   43.153 
>   16 | 0.0817 |   260189    41538   301726   49.190 
>   17 | 0.0814 |   259153    41616   300769   38.238 
>   18 | 0.0810 |   258037    42487   300524   36.813 
>                                                                    485s
>  Jacobian determinant (RMS):  0.123885 
>           Template Matching:  0.081031 
>Write result maps:                                                  287s
>Surface and thickness estimation:                                 
>lh:
>  Thickness estimation (0.50 mm�):                                
>    WM distance:                                                     51s
>    CSF distance:                                                    63s
>    PBT2x thickness:                                                 34s
>                                                                    168s
>                                                                    180s
>  Create initial surface                                            309s
>  Topology correction and surface refinement:                       941s
>  Thickness / Depth mapping                                           1s
>  Correction of central surface in highly folded areas                6s
>  Spherical mapping with areal smoothing                            275s
>  Spherical registration                                            416s
>rh:
>  Thickness estimation (0.50 mm�):                                
>    WM distance:                                                     53s
>    CSF distance:                                                    64s
>    PBT2x thickness:                                                 37s
>                                                                    174s
>                                                                    187s
>  Create initial surface                                            315s
>  Topology correction and surface refinement:                       930s
>  Thickness / Depth mapping                                           1s
>  Correction of central surface in highly folded areas                5s
>  Spherical mapping with areal smoothing                            279s
>  Spherical registration                                            400s
>Display thickness: /Volumes/Macintosh HD 2/mridata/Subjects/T1/surf/lh.thickness.T01
>Display thickness: /Volumes/Macintosh HD 2/mridata/Subjects/T1/surf/rh.thickness.T01
>Surface and thickness estimation:                                  4457s
>ROI estimation:                                                   
>  Data mapping to normalized atlas space                          
>------------------------------------------------------------------------
>       Segmentation violation detected at Wed Aug  1 13:26:05 2018
>------------------------------------------------------------------------
>
>Configuration:
>  Crash Decoding     : Disabled
>  Current Visual     : None
>  Default Encoding   : ISO-8859-1
>  MATLAB Architecture: maci64
>  MATLAB Root        : /Applications/MATLAB_R2013a.app
>  MATLAB Version     : 8.1.0.604 (R2013a)
>  Operating System   : Darwin 13.4.0 Darwin Kernel Version 13.4.0: Mon Jan 11 18:17:34 PST 2016; root:xnu-2422.115.15~1/RELEASE_X86_64 x86_64
>  Processor ID       : x86 Family 6 Model 44 Stepping 2, GenuineIntel
>  Virtual Machine    : Java 1.6.0_65-b14-462-11M4609 with Apple Inc. Java HotSpot(TM) 64-Bit Server VM mixed mode
>  Window System      : No active display
>
>Fault Count: 1
>
>
>Abnormal termination:
>Segmentation violation
>
>Register State (from fault):
>  RAX = 000000010ed57000  RBX = 0000000116833a00
>  RCX = 00007fd78fdc0413  RDX = 0000000000000000
>  RSP = 0000000007cc4670  RBP = 000000011d2a9450
>  RSI = 00007fff923cf6ca  RDI = 000000011d2a94c0
>
>   R8 = 0000000000000000   R9 = 0000000000000018
>  R10 = 0000000095805e00  R11 = 000000000f8ea068
>  R12 = 000000011d2a9600  R13 = 00000001292767e3
>  R14 = ffffffffffffffff  R15 = 0000000000000002
>
>  RIP = 0000000000000004  RFL = 000000010ed57000
>
>   CS = 3ff0000000000000   FS = 000000010ed57000   GS = 3f9703d000000000
>
>Stack Trace (from fault):
>[  0] 0x000000010ed62507 /Applications/MATLAB_R2013a.app/bin/maci64/libmwfl.dylib+00029959 _ZN2fl4diag15stacktrace_base7captureERKNS0_14thread_contextEm+00000215
>[  1] 0x000000010ed65d42 /Applications/MATLAB_R2013a.app/bin/maci64/libmwfl.dylib+00044354 _ZN2fl4test17terminate_handledEv+00000834
>[  2] 0x000000010ed6585a /Applications/MATLAB_R2013a.app/bin/maci64/libmwfl.dylib+00043098 _ZN2fl4diag13terminate_logEPKcRKNS0_14thread_contextE+00000106
>[  3] 0x000000010f5517af /Applications/MATLAB_R2013a.app/bin/maci64/libmwmcr.dylib+00251823 _Z32mnRunPathDependentInitializationv+00002879
>[  4] 0x000000010f551a21 /Applications/MATLAB_R2013a.app/bin/maci64/libmwmcr.dylib+00252449 _Z32mnRunPathDependentInitializationv+00003505
>[  5] 0x000000010f54ff22 /Applications/MATLAB_R2013a.app/bin/maci64/libmwmcr.dylib+00245538 mnSIGABRTHandler+00000530
>[  6] 0x000000010f5500b6 /Applications/MATLAB_R2013a.app/bin/maci64/libmwmcr.dylib+00245942 mnFatalSignalHandler+00000086
>[  7] 0x00007fff903895aa           /usr/lib/system/libsystem_platform.dylib+00013738 _sigtramp+00000026
>[  8] 0x0000000000000040                                   <unknown-module>+00000000
>[  9] 0x0000000129270129           /Applications/SPM12/spm_diffeo.mexmaci64+00012585 push_mexFunction+00000473
>[ 10] 0x0000000129271e19           /Applications/SPM12/spm_diffeo.mexmaci64+00019993 mexFunction+00000473
>[ 11] 0x0000000113ba9a6b /Applications/MATLAB_R2013a.app/bin/maci64/libmex.dylib+00055915 mexRunMexFile+00000075
>[ 12] 0x0000000113ba5799 /Applications/MATLAB_R2013a.app/bin/maci64/libmex.dylib+00038809 _ZN7Mfh_mex30runMexFileWithSignalProtectionEiPP11mxArray_tagiS2_+00000105
>[ 13] 0x0000000113ba593d /Applications/MATLAB_R2013a.app/bin/maci64/libmex.dylib+00039229 _ZN7Mfh_mex13dispatch_fileEiPP11mxArray_tagiS2_+00000253
>[ 14] 0x000000010f6476d8 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_dispatcher.dylib+00292568 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000264
>[ 15] 0x000000010f99c658 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+02836056 _ZN20ResolverFunctionDesc12CallFunctionEiPP11mxArray_tagiS2_+00000184
>[ 16] 0x000000010f99cf6d /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+02838381 _ZN8Resolver13CallMFunctionEiiP10_m_operandP17m_operand_storageiS1_S3_Pi+00001597
>[ 17] 0x000000010f99da5b /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+02841179 _Z22inResolveMFunctionCallP16_m_function_desciiP10_m_operandP17m_operand_storageiS2_S4_PiP13inMarshalTypeiPK19mpsTypeSequenceNlhsPFP11mxArray_tagiE+00000219
>[ 18] 0x000000010f81e8eb /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+01272043 _ZN9accelImpl13MFunctionCallEPP8_accelOp+00000395
>[ 19] 0x000000010f81ef92 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+01273746 _ZN9accelImpl4ExecEv+00000210
>[ 20] 0x000000010f81ecee /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+01273070 _ZNK9accelCode4CallEP13inMarshalTypePi+00000094
>[ 21] 0x000000010f950f6e /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+02527086 _ZN5inJit17ExecuteHotSegmentEP15_inJitAccelInfoP7opcodesPiPl+00003982
>[ 22] 0x000000010f781c30 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00629808 inPcodeWalker+00000976
>[ 23] 0x000000010f7865d9 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00648665 _Z18protected_inInterp12inDebugCheckii7opcodesPV15inPcodeNest_tagPl+00000105
>[ 24] 0x000000010f77f25c /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00619100 inInterPcode+00000780
>[ 25] 0x000000010f780277 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00623223 _Z26inExecuteMFunctionOrScriptP6Mfh_mpb+00000983
>[ 26] 0x000000010f7f361e /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+01095198 _Z10inRunMfileiPP11mxArray_tagiS1_P6Mfh_mpP15inWorkSpace_tag+00005358
>[ 27] 0x000000010f6476d8 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_dispatcher.dylib+00292568 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000264
>[ 28] 0x000000010f7d2acd /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00961229 _Z19inDispatchFromStackiPKcii+00001741
>[ 29] 0x000000010f7859c9 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00645577 inPcodeWalker+00016745
>[ 30] 0x000000010f782bf6 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00633846 inPcodeWalker+00005014
>[ 31] 0x000000010f7865d9 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00648665 _Z18protected_inInterp12inDebugCheckii7opcodesPV15inPcodeNest_tagPl+00000105
>[ 32] 0x000000010f77f25c /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00619100 inInterPcode+00000780
>[ 33] 0x000000010f780277 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00623223 _Z26inExecuteMFunctionOrScriptP6Mfh_mpb+00000983
>[ 34] 0x000000010f7f361e /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+01095198 _Z10inRunMfileiPP11mxArray_tagiS1_P6Mfh_mpP15inWorkSpace_tag+00005358
>[ 35] 0x000000010f6476d8 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_dispatcher.dylib+00292568 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000264
>[ 36] 0x000000010f7d2acd /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00961229 _Z19inDispatchFromStackiPKcii+00001741
>[ 37] 0x000000010f7859c9 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00645577 inPcodeWalker+00016745
>[ 38] 0x000000010f782bf6 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00633846 inPcodeWalker+00005014
>[ 39] 0x000000010f7865d9 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00648665 _Z18protected_inInterp12inDebugCheckii7opcodesPV15inPcodeNest_tagPl+00000105
>[ 40] 0x000000010f77f25c /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00619100 inInterPcode+00000780
>[ 41] 0x000000010f780277 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00623223 _Z26inExecuteMFunctionOrScriptP6Mfh_mpb+00000983
>[ 42] 0x000000010f7f361e /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+01095198 _Z10inRunMfileiPP11mxArray_tagiS1_P6Mfh_mpP15inWorkSpace_tag+00005358
>[ 43] 0x000000010f6476d8 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_dispatcher.dylib+00292568 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000264
>[ 44] 0x000000010f7d2acd /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00961229 _Z19inDispatchFromStackiPKcii+00001741
>[ 45] 0x000000010f7859c9 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00645577 inPcodeWalker+00016745
>[ 46] 0x000000010f782bf6 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00633846 inPcodeWalker+00005014
>[ 47] 0x000000010f7865d9 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00648665 _Z18protected_inInterp12inDebugCheckii7opcodesPV15inPcodeNest_tagPl+00000105
>[ 48] 0x000000010f77f25c /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00619100 inInterPcode+00000780
>[ 49] 0x000000010f780277 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00623223 _Z26inExecuteMFunctionOrScriptP6Mfh_mpb+00000983
>[ 50] 0x000000010f7f361e /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+01095198 _Z10inRunMfileiPP11mxArray_tagiS1_P6Mfh_mpP15inWorkSpace_tag+00005358
>[ 51] 0x000000010f6476d8 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_dispatcher.dylib+00292568 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000264
>[ 52] 0x000000010f7d2acd /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00961229 _Z19inDispatchFromStackiPKcii+00001741
>[ 53] 0x000000010f7859c9 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00645577 inPcodeWalker+00016745
>[ 54] 0x000000010f782bf6 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00633846 inPcodeWalker+00005014
>[ 55] 0x000000010f7865d9 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00648665 _Z18protected_inInterp12inDebugCheckii7opcodesPV15inPcodeNest_tagPl+00000105
>[ 56] 0x000000010f77f25c /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00619100 inInterPcode+00000780
>[ 57] 0x000000010f780277 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00623223 _Z26inExecuteMFunctionOrScriptP6Mfh_mpb+00000983
>[ 58] 0x000000010f7f361e /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+01095198 _Z10inRunMfileiPP11mxArray_tagiS1_P6Mfh_mpP15inWorkSpace_tag+00005358
>[ 59] 0x000000010f6476d8 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_dispatcher.dylib+00292568 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000264
>[ 60] 0x000000010f7d2acd /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00961229 _Z19inDispatchFromStackiPKcii+00001741
>[ 61] 0x000000010f7859c9 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00645577 inPcodeWalker+00016745
>[ 62] 0x000000010f782bf6 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00633846 inPcodeWalker+00005014
>[ 63] 0x000000010f7865d9 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00648665 _Z18protected_inInterp12inDebugCheckii7opcodesPV15inPcodeNest_tagPl+00000105
>[ 64] 0x000000010f77f25c /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00619100 inInterPcode+00000780
>[ 65] 0x000000010f780277 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00623223 _Z26inExecuteMFunctionOrScriptP6Mfh_mpb+00000983
>[ 66] 0x000000010f7f361e /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+01095198 _Z10inRunMfileiPP11mxArray_tagiS1_P6Mfh_mpP15inWorkSpace_tag+00005358
>[ 67] 0x000000010f6476d8 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_dispatcher.dylib+00292568 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000264
>[ 68] 0x000000010f7d2acd /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00961229 _Z19inDispatchFromStackiPKcii+00001741
>[ 69] 0x000000010f75b937 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00473399 inCallFcnFromReference+00001575
>[ 70] 0x000000010f7840a9 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00639145 inPcodeWalker+00010313
>[ 71] 0x000000010f7865d9 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00648665 _Z18protected_inInterp12inDebugCheckii7opcodesPV15inPcodeNest_tagPl+00000105
>[ 72] 0x000000010f77f25c /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00619100 inInterPcode+00000780
>[ 73] 0x000000010f780277 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00623223 _Z26inExecuteMFunctionOrScriptP6Mfh_mpb+00000983
>[ 74] 0x000000010f7f361e /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+01095198 _Z10inRunMfileiPP11mxArray_tagiS1_P6Mfh_mpP15inWorkSpace_tag+00005358
>[ 75] 0x000000010f6476d8 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_dispatcher.dylib+00292568 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000264
>[ 76] 0x000000010f7bfbcb /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00883659 _Z23inEvalPcodeHeaderToWordP15_memory_contextiPP11mxArray_tagP12_pcodeheaderP6Mfh_mpj+00000187
>[ 77] 0x000000010f77a696 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00599702 _Z25in_local_call_with_setjmpIN5boost3_bi6bind_tIvPFvP15_memory_contextPiPP11mxArray_tagP12_pcodeheaderjENS1_5list5INS1_5valueIS4_EENS0_3argILi1EEENSG_ILi2EEENSE_ISA_EENSE_IiEEEEEEEN6mlutil14cmddistributor17inExecutionStatusET_S5_S8_b+00000054
>[ 78] 0x000000010f774fed /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00577517 inEvalString+00002317
>[ 79] 0x000000010f776220 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00582176 _ZN12InterpBridge22EvalCmdWithLocalReturnEPKcPibb+00000144
>[ 80] 0x000000010f7799a3 /Applications/MATLAB_R2013a.app/bin/maci64/libmwm_interpreter.dylib+00596387 _ZN12InterpBridge37EvalCmdWithLocalReturnInDesiredWSImplIPKcEEN6mlutil14cmddistributor17inExecutionStatusET_PibbP15inWorkSpace_tag+00000067
>[ 81] 0x000000011323c6c0 /Applications/MATLAB_R2013a.app/bin/maci64/libmwiqm.dylib+00775872 _ZNK3iqm18InternalEvalPlugin24inEvalCmdWithLocalReturnERKSbItSt11char_traitsItESaItEEP15inWorkSpace_tag+00000224
>[ 82] 0x000000011323bb35 /Applications/MATLAB_R2013a.app/bin/maci64/libmwiqm.dylib+00772917 _ZN3iqm18InternalEvalPlugin7executeEP15inWorkSpace_tagRN5boost10shared_ptrIN14cmddistributor17IIPCompletedEventEEE+00000149
>[ 83] 0x000000010f52bbd4 /Applications/MATLAB_R2013a.app/bin/maci64/libmwmcr.dylib+00097236 _ZN3mcr3mvm27McrSwappingIqmPluginAdapterIN3iqm18InternalEvalPluginEE7executeEP15inWorkSpace_tagRN5boost10shared_ptrIN14cmddistributor17IIPCompletedEventEEE+00000996
>[ 84] 0x00000001131d56d9 /Applications/MATLAB_R2013a.app/bin/maci64/libmwiqm.dylib+00354009 _ZNK3iqm17DefaultPacketInfo7executeEP15inWorkSpace_tag+00000233
>[ 85] 0x00000001131c1eab /Applications/MATLAB_R2013a.app/bin/maci64/libmwiqm.dylib+00274091 _ZN3iqm10DefaultIqm7dequeueERKN5boost8optionalIKP15inWorkSpace_tagEEN14cmddistributor11IqmStreamIDE+00000427
>[ 86] 0x0000000114ac3895 /Applications/MATLAB_R2013a.app/bin/maci64/libmwbridge.dylib+00026773 _Z10ioReadLinebP7__sFILERKN5boost8optionalIKP15inWorkSpace_tagEEb+00000213
>[ 87] 0x0000000114ac4484 /Applications/MATLAB_R2013a.app/bin/maci64/libmwbridge.dylib+00029828 _Z10ioReadLinebP7__sFILEb+00000036
>[ 88] 0x0000000114ac9c51 /Applications/MATLAB_R2013a.app/bin/maci64/libmwbridge.dylib+00052305 _Z22mnGetCommandLineBufferb+00001585
>[ 89] 0x0000000114ac9668 /Applications/MATLAB_R2013a.app/bin/maci64/libmwbridge.dylib+00050792 _Z22mnGetCommandLineBufferb+00000072
>[ 90] 0x0000000114aca59b /Applications/MATLAB_R2013a.app/bin/maci64/libmwbridge.dylib+00054683 _Z8mnParserv+00000667
>[ 91] 0x000000010f53d872 /Applications/MATLAB_R2013a.app/bin/maci64/libmwmcr.dylib+00170098 _ZN11mcrInstance30mnParser_on_interpreter_threadEv+00000034
>[ 92] 0x000000010f51c2eb /Applications/MATLAB_R2013a.app/bin/maci64/libmwmcr.dylib+00033515 _ZN3mcr7runtime17InterpreterThread4Impl17InvocationRequest3runEv+00000075
>[ 93] 0x000000010f51c32f /Applications/MATLAB_R2013a.app/bin/maci64/libmwmcr.dylib+00033583 _ZN3mcr7runtime17InterpreterThread4Impl26invocation_request_handlerEl+00000031
>[ 94] 0x000000010f07c27d /Applications/MATLAB_R2013a.app/bin/maci64/libmwservices.dylib+00086653 _ZN10eventqueue18UserEventQueueImpl5flushEv+00001133
>[ 95] 0x0000000116232675 /Applications/MATLAB_R2013a.app/bin/maci64/libmwuix.dylib+00149109 _Z25isHandleUserEventCallbackPFvPvE+00000565
>[ 96] 0x000000010f10882e /Applications/MATLAB_R2013a.app/bin/maci64/libmwservices.dylib+00661550 _Z25svWS_ProcessPendingEventsv+00010030
>[ 97] 0x000000010f104a60 /Applications/MATLAB_R2013a.app/bin/maci64/libmwservices.dylib+00645728 _Z25svWS_ProcessPendingEventsiib+00001088
>[ 98] 0x000000010f51c52f /Applications/MATLAB_R2013a.app/bin/maci64/libmwmcr.dylib+00034095 _ZN3mcr7runtime17InterpreterThread4Impl14process_eventsERKN5boost10shared_ptrIS2_EE+00000111
>[ 99] 0x000000010f51c81e /Applications/MATLAB_R2013a.app/bin/maci64/libmwmcr.dylib+00034846 _ZN3mcr7runtime17InterpreterThread4Impl3runERKN5boost10shared_ptrIS2_EEPNS2_12init_contextE+00000334
>[100] 0x000000010f517348 /Applications/MATLAB_R2013a.app/bin/maci64/libmwmcr.dylib+00013128 _Z26run_init_and_handle_eventsPv+00000056
>[101] 0x00007fff90202899            /usr/lib/system/libsystem_pthread.dylib+00006297 _pthread_body+00000138
>[102] 0x00007fff9020272a            /usr/lib/system/libsystem_pthread.dylib+00005930 _pthread_struct_init+00000000
>[103] 0x00007fff90206fc9            /usr/lib/system/libsystem_pthread.dylib+00024521 thread_start+00000013
>
>
>This error was detected while a MEX-file was running. If the MEX-file
>is not an official MathWorks function, please examine its source code
>for errors. Please consult the External Interfaces Guide for information
>on debugging MEX-files.
>
>If this problem is reproducible, please submit a Service Request via:
>    http://www.mathworks.com/support/contact_us/
>
>A technical support engineer might contact you with further information.
>
>Thank you for your help.** This crash report has been saved to disk as /Users/yann/matlab_crash_dump.15806-1 **
>
>
>
>MATLAB is exiting because of fatal error
>