Dear Wanting,
this is probably an error of an older CAT12 release. Please try either the current relesase 1318 or wait a few days longer for the new version CAT12.5.
Best,
Christian
On Thu, 9 Aug 2018 18:33:35 -0500, Wanting Zhong <[log in to unmask]> wrote:
>Dear CAT12 experts,
>
>I was attempting to use the transform spmT maps function to generate
>thresholded T maps for display purposes. I have already run the
>install_atlases function and I used the dartel_aal atlas when setting up
>the job. However I encounter the following error:
>
>------------------------------------------------------------------------
>Running job #2
>------------------------------------------------------------------------
>Running 'Threshold and transform spmT images'
>Failed 'Threshold and transform spmT images'
>Attempted to access id(1); index out of bounds because numel(id)=0.
>In file
>"C:\Users\cnl1796\Documents\MATLAB\spm12\@xmltree\private\xml_parser.m"
>(v6480), function "attribution" at line 317.
>In file
>"C:\Users\cnl1796\Documents\MATLAB\spm12\@xmltree\private\xml_parser.m"
>(v6480), function "tag_element" at line 237.
>In file
>"C:\Users\cnl1796\Documents\MATLAB\spm12\@xmltree\private\xml_parser.m"
>(v6480), function "compile" at line 201.
>In file
>"C:\Users\cnl1796\Documents\MATLAB\spm12\@xmltree\private\xml_parser.m"
>(v6480), function "xml_parser" at line 134.
>In file "C:\Users\cnl1796\Documents\MATLAB\spm12\@xmltree\xmltree.m"
>(v4460), function "xmltree" at line 52.
>In file "C:\Users\cnl1796\Documents\MATLAB\spm12\spm_atlas.m" (v6656),
>function "spm_atlas" at line 68.
>In file "C:\Users\cnl1796\Documents\MATLAB\spm12\spm_atlas.m" (v6656),
>function "spm_atlas" at line 107.
>In file
>"C:\Users\cnl1796\Documents\MATLAB\spm12\toolbox\cat12\cat_stat_spm2x.m"
>(v1233), function "cat_stat_spm2x" at line 370.
>
>The following modules did not run:
>Failed: Threshold and transform spmT images
>
>-------------------
>
>I figured it may be an atlas issue; I reran using the Neuromorphometric
>atlas and was able to execute the command. After inspecting the SPM12 atlas
>folder, I see that all the xml files start with "labels_dartel_" while the
>nifti files do not. Is this causing the error? How would I be able to fix
>the problem?
>
>Thanks!
>
>Best,
>Wanting
>
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