Hi Wolfgang,
This has been extended. There now is an environment variable
RELION_QSUB_EXTRA_COUNT, which lets you define more than two of these.
The rest of the syntax remains the same. So, if you set the
RELION_QSUB_EXTRA_COUNT to 2, everything should be as before. I've
amended the description.
HTH,
S
On 08/02/2018 10:38 AM, Lugmayr, Wolfgang wrote:
> Hi,
>
> we are using the RELION_QSUB_EXTRA1 and RELION_QSUB_EXTRA2 environment variables to change the GUI and substitute values in the submission script.
>
> In the current git version this does not seem to work anymore.
>
> When i search the code its still somewhere there:
> ./src/pipeline_jobs.cpp: if (joboptions.find("qsub_extra2") != joboptions.end())
> ./src/pipeline_jobs.cpp: replacing["XXXextra2XXX"] = joboptions["qsub_extra2"].getString();
> ./src/pipeline_jobs.cpp:If these options are not enough for your standard jobs, you may define two extra variables: XXXextra1XXX and XXXextra2XXX \
> ./src/pipeline_jobs.cpp:Their help text is set by the environment variables RELION_QSUB_EXTRA1 and RELION_QSUB_EXTRA2 \
> ./src/pipeline_jobs.cpp:Likewise, default values for the extra entries can be set through environment variables RELION_QSUB_EXTRA1_DEFAULT and RELION_QSUB_EXTRA2_DEFAULT. \
>
> this feature was quite useful. is it still available?
>
> cheers,
> Wolfgang
>
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