Hi,
Right. Characters like &, #, * cause problems.
In RELION 3, the GUI checks the presence of these characters and
gives an error message instead of crashing.
Best regards,
Takanori Nakane
> We have encountered this in the past. '&' should not be used in job
> aliases as this is interpreted by the shell as a special character. Can
> fix by editing the default_pipeline.star and pointing it to the correct
> location in the .Nodes directory. The name of your directory is likely to
> have been truncated to ' selection_after3D_class1' (ie. everything before
> the '&'). If you have deleted files then maybe the easiest way to restore
> is by copying the default_pipeline.star file from the last successful job
> back into the top level project directory.
> Hope this helps,
> Ashley
>
> -----Original Message-----
> From: Collaborative Computational Project in Electron cryo-Microscopy
> <[log in to unmask]> On Behalf Of Tian. Li
> Sent: 25 July 2018 00:41
> To: [log in to unmask]
> Subject: [ccpem] Relion can't be launched
>
> Hello All,
>
> I was using Relion to analysis my datasets, and came across the Error as
> the following:
>
> [tli10@nsit-dhcp-148-121 process]$ sh: class2/: No such file or directory
> ERROR:
> Filename::touch ERROR: Cannot open file:
> .Nodes/3/Select/selection_after3D_class1&class2/particles.star
> File: /programs/x86_64-linux/relion/2.1_cu8.0/src/filename.cpp line: 440
> ^C
> [4] Exit 1 relion
>
> I think maybe it is due to the file name which contains "&" sign.
> I'm wondering how should I solve this issue? I have tried to delete the
> file, but still I couldn't launch Relion from the working directory.
>
> Thanks in advance,
>
> Tian
>
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