Hi Santhosh,
The seems to be the result of a rounded value in the SF file and a truncated value in the PDB. I suppose that the PDB file you are depositing actually does have the wavelength (it lives in REMARK 200, but depending on which refinement program you used it may also be in REMARK 3, just look in the PDB file for the number. You can edit it before resubmitting your PDB file.
Actually, I always run pdb_extract to my final PDB file to add log information from data processing and structure solution and then write out the lot in mmCIF. The deposition process seems to run much smoother when you upload an mmCIF file.
Cheers,
Robbie
> -----Original Message-----
> From: CCP4 bulletin board [mailto:[log in to unmask]] On Behalf Of
> Santhosh G
> Sent: Friday, July 13, 2018 09:44
> To: [log in to unmask]
> Subject: [ccp4bb] Wavelength mismatch during PDB deposition
>
> Dear all,
>
> I got an issue after submitting my structure to PDB.
>
> The exact message is as follows...
>
> 1. Wavelength mismatch (pdb= 0.9794 : sf= 0.9795)!
>
> Please provide the correct wavelength value used for the structure
> determination.
>
> The data I have collected at the synchrotron with wavelength-0.97947.
>
> How PDB extracts wavelength from PDB file, which I have not provided
> during the submission.
>
> Even though it calculates wavelength, what are situations that lead to the
> discrepancy.
>
> Please give suggestions.
>
>
> Thanks and regards,
> Santhosh
>
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