Hello,
Can you send me the report_log from your FEAT directory?
Kind Regards
Matthew
--------------------------------
Dr Matthew Webster
FMRIB Centre
John Radcliffe Hospital
University of Oxford
> On 13 Apr 2018, at 16:21, Nicholas Holmes <[log in to unmask]> wrote:
>
> Hello all,
>
> I've not used fugue before, but I'm sure it shouldn't take >4 hours to unwarp one image.
>
> FSL5.0, FEAT 6.0, Ubuntu 14.04, 32GB RAM
>
> EPI data (TR=2.4, TE=40ms, FA=75, 3x3x3mm, 36 slices, 124 volumes) from a Phillips 3T Achieva
>
> BO fieldmap images acquired in the same orientation. these are exported as DICOMs and dcm2nii gives a single magnitude and phase image per fieldmap
>
> following the advice on the FSL wiki, I have BET'd the mag image, and re-scaled, unwrapped, and converted the phase image to rad/sec (values in the final phase image are in the range of 0~8000 rad/s)
>
> based on a number of parameters found in the header file of the B0 images and the sequence documentation (TE difference=2.6ms; EPI spacing=0.603ms), and using the FEAT GUI, fugue seems to start but then hangs. and hangs some more.
>
> same trouble with same data experienced on a different computer.
>
> any advice for where to start fixing this would be very greatly appreciated
>
> many thanks
> Nick
>
> https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FUGUE/Guide
>
> http://support.brainvoyager.com/functional-analysis-preparation/27-pre-processing/459-epi-distortion-correction-echo-spacing.html
>
>
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