Dear Patrick,
please don't use cerebellar surface extraction because this is still very experimental and not fully working.
Best,
Christian
On Thu, 1 Mar 2018 18:57:25 +0000, Patrick <[log in to unmask]> wrote:
>Dear CAT Experts,
>
>I am running some segmentation using CAT12.1 (v1255) using the expert mode. When creating the report, however, I see that only left side of the surface is being rendered. When I run the same analysis via regular mode, both the hemispheres are rendered in the pdf. The non-default choices made in the expert mode batch are:
>
>-> set surface and thickness estimation to full
>-> save CSF results too
>-> perform ROI analysis using AAL (along with the defaults)
>-> save native space, normalized, modulated normalized, and DARTEL export for GM, WM, and CSF
>-> save PVE labels
>-> save bias, noise, and global intensity corrected images in all spaces
>-> save bias, noise, and local intensity corrected images in all spaces
>-> save Jacobian determinant in normalized space and both the deformation fields.
>
>When I check my surf folder, I see lh, rh, lc, and rc versions of central, sphere, sphere.reg, and thickness, files. What could be going wrong when writing the report? I see the same thing happening on Windows and Linux (RHEL).
>
>
>Thanks and Regards
>PB
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