Hello,
It looks like the fslpython install may have failed - can you run:
$FSLDIR/etc/fslconf/fslpython_install.sh
and retry feeds?
Kind Regards
Matthew
--------------------------------
Dr Matthew Webster
FMRIB Centre
John Radcliffe Hospital
University of Oxford
> On 27 Mar 2018, at 00:24, ARJUN MUKERJI <[log in to unmask]> wrote:
>
> Hi FSLers,
>
> There appears to be a mismatch between the test suite in FEEDS 5.0.11 and the FSL software. Specifically, after upgrading from 5.0.10 using the fslinstaller.py script, I attempted to run the FEEDS tests and had them fail (output below). The cause seems to be that the imcp utility does not exist in the FSL directory.
>
> ---
>
> prism:feeds smerdis$ ./RUN all
>
> FSL Evaluation and Example Data Suite v5.0.11
>
> start time = Mon Mar 26 16:18:56 PDT 2018
> hostname = prism
> os = Darwin prism 17.4.0 Darwin Kernel Version 17.4.0: Sun Dec 17 09:19:54 PST 2017; root:xnu-4570.41.2~1/RELEASE_X86_64 x86_64
>
>
> /bin/rm -rf /Users/smerdis/Downloads/feeds/results ; mkdir /Users/smerdis/Downloads/feeds/results
>
>
> Starting PRELUDE & FUGUE at Mon Mar 26 16:18:56 PDT 2018
> % error = 0.0
> % error = 0.0
>
> Starting SUSAN at Mon Mar 26 16:18:56 PDT 2018
> % error = 0.03
>
> Starting SIENAX (including testing BET and FLIRT and FAST) at Mon Mar 26 16:19:41 PDT 2018
> child process exited abnormally
> while executing
> "fsl:exec "${FSLDIR}/bin/imcp $FEEDSDIR/data/structural $FEEDSDIR/results/structural""
> invoked from within
> "if { $feeds(sienax) } {
>
> puts "\nStarting SIENAX (including testing BET and FLIRT and FAST) at [ exec date ]"
>
> fsl:exec "${FSLDIR}/bin/imcp $FEEDSDIR/..."
> (file "./RUN" line 233)
>
>
> prism:feeds smerdis$ ${FSLDIR}/bin/imcp
> -bash: /usr/local/fsl/bin/imcp: No such file or directory
>
>
> --
> Arjun Mukerji
> PhD Candidate, Silver Lab
> Helen Wills Neuroscience Institute
> University of California, Berkeley
>
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