Hello,
Can you confirm how many volumes
/proj/dichterlab/BATA/Data/Func/BA0047/BA0047_V1/6_MID_AP
has? Also if you just run
feat_model design
in the FEAT directory which fails, do you get any extra error messages?
Kind Regards
Matthew
--------------------------------
Dr Matthew Webster
FMRIB Centre
John Radcliffe Hospital
University of Oxford
> On 20 Nov 2017, at 21:26, Erin W. <[log in to unmask]> wrote:
>
> Hi,
>
> I am receiving a similar error message when attempting to run a batch script and unable to determine the cause.
>
> Errors as follows:
>
> "child killed: SIGABRT
> while executing
> "fsl:exec "${FSLDIR}/bin/feat_model design" $fmri(featModelOpts) -N feat0_model -l logs "
> (procedure "firstLevelMaster" line 43)
> invoked from within
> "firstLevelMaster $session"
> invoked from within
> "if { $done_something == 0 } {
>
> if { ! $fmri(inmelodic) } {
> if { $fmri(level) == 1 } {
> for { set session 1 } { $session <= $fmri(mult..."
> (file "/nas/longleaf/apps/fsl/5.0.10/fsl/bin/feat" line 390)
> /bin/cp /proj/dichterlab/BATA/Analysis/MID/Prestats_1stLev/BA0047/BA0047_V1/antic/FEAT_run1.fsf design.fsf
>
> /nas/longleaf/apps/fsl/5.0.10/fsl/bin/feat_model design"
>
>
> "terminate called after throwing an instance of 'NEWMAT::ProgramException'
>
> FATAL ERROR ENCOUNTERED:
> COMMAND:
> /nas/longleaf/apps/fsl/5.0.10/fsl/bin/feat_model design
> ERROR MESSAGE:
> child killed: SIGABRT
> END OF ERROR MESSAGE"
>
>
> When I load the design.fsf file for a given participant, all paths appear correctly and it runs without error from the GUI.
>
> The only thing that I can possibly think of is that in the template.fsf file (attached), I list "Total Number of Volumes" as "NVOL", which in my batch script uses fslnvols to count the number of volumes (because they may slightly vary per person).
>
> In the script it is: NVOL=`fslnvols $FUNCDATA` (when I echo, there are no errors)
>
> Any help is appreciated!
>
> Best,
> Erin
> <template.fsf><design.fsf>
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