Sara
Could you give a brief description of what files are in the "FA" folder? How many subjects are in this process?
Cheers
Danny
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From: FSL - FMRIB's Software Library [[log in to unmask]] on behalf of [log in to unmask] [[log in to unmask]]
Sent: Monday, October 16, 2017 9:46 AM
To: [log in to unmask]
Subject: Re: [FSL] tbss_non_FA not running
Hi FSL team,
I want to run TBSS on my AD data. I followed the instruction on the website and I still get the following error:
/usr/local/fsl/bin/tbss_non_FA: line 96: /usr/local/fsl/bin/imglob: Argument list too long
merging all upsampled AD images into single 4D image
Usage: fslmerge <-x/y/z/t/a/tr> <output> <file1 file2 .......> [tr value in seconds]
-t : concatenate images in time
-x : concatenate images in the x direction
-y : concatenate images in the y direction
-z : concatenate images in the z direction
-a : auto-choose: single slices -> volume, volumes -> 4D (time series)
-tr : concatenate images in time and set the output image tr to the final option value
Cannot open volume all_AD for reading!
projecting all_AD onto mean FA skeleton
Image Exception : #22 :: ERROR: Could not open image all_AD
libc++abi.dylib: terminating with uncaught exception of type RBD_COMMON::BaseException
/usr/local/fsl/bin/tbss_non_FA: line 105: 82036 Abort trap: 6
I also changes line 96 from
${FSLDIR}/bin/fslmerge -t ../stats/all_$ALTIM `$FSLDIR/bin/imglob *_to_target_${ALTIM}.*`
to
${FSLDIR}/bin/fslmerge -t ../stats/all_$ALTIM `$FSLDIR/bin/imglob *_to_target_${ALTIM}.nii.gz`
but it didn't help at all.
What else can I do to resolve this issue.
Thanks,
Sara
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