Dear Ally,
>
> I am trying to use FSL topup and am getting the following error: Topup: msg=topup_clp::topup_clp: Mismatch between both_b0 and acq_params.txt.
>
> What does this mean and how is it fixed?
this tells you that there is a mismatch between your input data (both_b0) and your specification of the acquisition parameters (acq_params.txt). My guess is that you have a different number of volumes in both_b0 to the number of lines you have in acq_params.txt.
Jesper
>
> Thank you!
>
> Ally
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