By HKL, I assume you mean an XDS output file. In that case, xdsconv from
the XDS package works. Pick one of the CCP4 formats (like CCP4_I+F).
Then, xdsconv essentially tells you to run f2mtz and cad (I think) with
certain options. It does employ a French-Wilson scheme for converting
negative intensities, if you like that.
I had been encountering (for a long time) one issue, though. The
OUTPUT_FILE parameter seems to not take effect (at least in the CCP4_I+F
format) and defaults to something like output_file.mtz within the
commands xdsconv instructs you to type. Manually change it.
Engin
On 10/5/17 10:26 PM, Edward A. Berry wrote:
> On 10/05/2017 11:01 PM, ameya benz wrote:
>> Hi,
>>
>> I want to convert HKL file to mtz. I tried using F2mtz but somehow
>> the output mtz is not working. What parameters should I set during
>> conversion. Or can anyone suggest alternative to F2mtz?
>>
>> regards,
>> Ameya
>> National chemical laboratory, Pune, India
>
> Hi, Ameya,
> F2mtz works.
> In order for someone to help you you need to give more information.
> What does your HKL file look like (show us the first 10-20 lines)?
> Are you running f2mtz from one of the GUIs, or from a a script or
> commandline?
> What parameters did you give (or what was your script)? (often the
> FORMAT statement is the problem).
> And in what way the output mtz file is not working? maybe use mtzdump
> to show what you got.
> Hope that will lead to a speedy resolution!
--
Engin Özkan, Ph.D.
Assistant Professor
Dept of Biochemistry and Molecular Biology
University of Chicago
Phone: (773) 834-5498
http://ozkan.uchicago.edu
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