Hi
I have anatomical images from an open datasource. Currently, I ran fsl_anat on the anatomical scans without registration to MNI (in the near future I am interested in creating my own anatomical common space using ANTs, therefore I skipped the MNI registration). Some of the original images are a little bit oblique and even though I ran fslreorient2std as part fsl_anat the output remained oblique, how is it possible to deoblique the anatomical scans without registration to MNI?
Thanks in advance,
Keren
|