Dear SPM experts
i tried to normalize some fmri images to the epi template (found in the folder toolbox/OldNorm). After normalization, the origin of the images is not at the anterior commisure. I attached a picture. Do you have any ideas what to do in this case?
I used the following pipeline:
SliceTiming
Realign&unwarp
Normalise: Estimate & Write
- image to Align DEP Realign&Unwarp Mean Image
- imagetowrite DEP Realign&Unwarp: Unwarped Images
- Tissue probability map: path/OldNorm/EPI.nii
Smooth
Best wishes
Silvano
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