Dear Stephane,
Just to point out a function estimating a rigid body transformation to
match a T1 template:
https://en.wikibooks.org/wiki/SPM/How-to#How_to_automatically_reorient_images.3F
Best regards,
Guillaume.
On 25/08/17 14:28, Stephane De Brito wrote:
> Dear SPM experts,
>
> I am working on a large T1-weighted dataset of over 600 participants aged 9-18 years and would like to automatically set the AC/PC line as origin before segmenting the scans for a VBM analysis. As suggested by Marko Wilke in a different post, I tried the 'Set origin using centre of mass' option from VBM8, but it did not do a great job unfortunately.
>
> I have tried to use the Automatic Registration Toolbox described in this paper https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2674131/ by Ardekani and Bachman (2009), but cannot open the SimuLink Model file to run it...
>
> I would appreciate any suggestions of toolbox or script that could do the job. Thank you.
>
> Stephane
>
--
Guillaume Flandin, PhD
Wellcome Trust Centre for Neuroimaging
University College London
12 Queen Square
London WC1N 3BG
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