I am trying to use AutoPtx to identify the Uncinate fasciculus in a group of subjects however I cannot find instructions for how to use autoPtx_1_preproc and autoPtx_2_launchTractograpy. For example, what should the inputs be? Is this in the same format as bedpostx and probtrackx?
The wiki page (https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/AutoPtx) does not describe how to use the plug in. Can you please point me in the right direction to get instructions on how to use this plug in.
Thank you very much!