Thanks very much for your answer, Matteo.
Just for curiosity, is it possible to construct a ROIxROI matrix from fdt_matrix3.dot, instead of using --network option? What is the best approach?
Also, what are the main differences between matrix1 and matrix3? If I am right, matrix1 uses the same set as seeds and targets and in matrix3 it's possible to define a different set of targets. Is this correct?
Best regards,
Ana
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