I am having trouble normalizing one 4d into MNI with spm 12. I just have one resting state image (4D) and one T1 image and I want to normalize the T1 and the 4D image into MNI space.
I follow these steps steps
1. I realign my 4D image, getting the mean resting state image
2. Coregister (Estimate) the mean EPI to the anatomical image
3. Normalize (Est & Write) choose the T1 as source and the 4D as Image to write. (I also tried putting in Image to write the mean resting state, the 4D resting state but with the same results)
The problem is that I get only one volume of the warp functional image , it says is 4D but actually is only one volume,
[~/val...gate/bcpa0537_0] $ fslinfo wrestingstate.nii