Hi,
If you are doing task fMRI and using FEAT then you can enter an ROI mask using the "Pre-threshold masking" option in the Post-stats tab. That will then perform an appropriate ROI analysis.
All the best,
Mark
> On 9 Apr 2017, at 17:28, Ben Mansel <[log in to unmask]> wrote:
>
> Hello
>
> Quite new to FSL so apologies for the silly questions.
>
> In my experiment, I am not interested in the whole brian. Rather, I am interested in one particular area.
>
> I am not sure how to conduct an ROI however. I know how to use FeatQuery - but I'm confused about where this analysis should be done.
>
> Following first-level analysis, do I conduct an ROI analysis through FeatQuery for each individual subject, followed by group analysis?
>
> Any help is appreciated. I am only looking for a simplified step-by-step process.
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