Dear Matthieu,
On 1 Mar 2017, at 17:04, Matthieu Vanhoutte wrote:
> Dear Christian,
>
> Yes I have tried to use the original T1-image and it has been working.
> However when used in longitudinal case, it has not...
>
> Could I share original and registered (long) T1/PET images with you ?
Yes.
URL: https://upload.uni-jena.de
Username: 58b6f637cbb56@upload
Password: h2SJFMjzRx
>
> Best regards,
> Matthieu
>
> 2017-03-01 16:42 GMT+01:00 Christian Gaser <[log in to unmask]>:
>
>> Dear Matthieu,
>>
>> I have tried that with several data sets and also older CAT12 versions for
>> long. data and everything runs fine. I suspect that there are some issues
>> with your 3D image. Have you tried to use the original T1-image, just to
>> see whether it’s working for that kind of data?
>>
>> Best,
>>
>> Christian
>>
>> On Fri, 24 Feb 2017 11:10:30 +0100, Matthieu Vanhoutte <
>> [log in to unmask]> wrote:
>>
>>> Dear Christian,
>>>
>>> Could you provide me any help on this error explained in former mail
>> below ?
>>>
>>> Many thanks in advance.
>>>
>>> Best regards,
>>> Matthieu
>>>
>>> 2017-02-09 12:04 GMT+01:00 Matthieu Vanhoutte <
>> [log in to unmask]>:
>>>
>>>> Dear Christian,
>>>>
>>>> Following my precedent mail below, I moreover detected that the mapping
>>>> seems to work for surfaces extracted from the classical segmentation
>>>> process, but not for surfaces coming from longitudinal process.
>>>>
>>>> Would there be naming convention that would lead to segmentation fault
>> or
>>>> anything else ?
>>>>
>>>> Best regards,
>>>> Matthieu
>>>>
>>>> 2017-02-09 11:10 GMT+01:00 Matthieu Vanhoutte <
>> [log in to unmask]
>>>>> :
>>>>
>>>>> Dear Christian,
>>>>>
>>>>> Trying to run "Map Volume (Native Space) to Individual Surface" I got
>> the
>>>>> following error (Matlab 2014b, CAT r1092):
>>>>>
>>>>> *-----------------------------------------------------------
>> -------------*
>>>>> *Running job #2*
>>>>> *-----------------------------------------------------------
>> -------------*
>>>>> *Running 'Map Volume (Native Space) to Individual Surface'*
>>>>>
>>>>> */home/global/matlab_toolbox/spm12/toolbox/cat12/CAT.
>> glnx86/CAT_3dVol2Surf
>>>>> -linear -maxabs -res "0.1000" -origin "0.0000" -length "1.0000"
>> -thickness
>>>>> "/NAS/tupac/matthieu/CAT_LONG/surf/lh.thickness.rorig.lia.
>> 207019_M0_2010-04-08"
>>>>> "/NAS/tupac/matthieu/CAT_LONG/surf/lh.central.rorig.lia.
>> 207019_M0_2010-04-08.gii"
>>>>> "/NAS/tupac/matthieu/CAT_LONG/pet/207019_M0_2010-04-08/reg/
>> rPET.lps.BS7.gn.rorig.nii"
>>>>> "/NAS/tupac/matthieu/CAT_LONG/surf/lh.intensity.rorig.lia.
>> 207019_M0_2010-04-08_rPET.lps.BS
>>>>> <http://7019_M0_2010-04-08_rPET.lps.BS>7.gn.rorig": Segmentation
>> fault*
>>>>> *Failed 'Map Volume (Native Space) to Individual Surface'*
>>>>> *Error using cat_check_system_output (line 27)*
>>>>> *Calculate values along relative position using thickness:*
>>>>> *0.00 0.10 0.20 0.30 0.40 0.50 0.60 0.70 0.80 0.90 1.00 *
>>>>> *Internal error: Cannot get pointer to cached Volume.*
>>>>>
>>>>>
>>>>> *In file
>>>>> "/mnt/software/matlab_toolbox/spm12/toolbox/cat12/cat_check_
>> system_output.m"
>>>>> (v1022), function "cat_check_system_output" at line 27.*
>>>>> *In file
>>>>> "/mnt/software/matlab_toolbox/spm12/toolbox/cat12/cat_surf_vol2surf.m"
>>>>> (v1043), function "cat_surf_vol2surf" at line 187.*
>>>>>
>>>>> *The following modules did not run:*
>>>>> *Failed: Map Volume (Native Space) to Individual Surface*
>>>>>
>>>>> Could you provide me any help ?
>>>>>
>>>>> Best regards,
>>>>> Matthieu
>>>>>
>>>>
>>>>
>>>
>>
>>
>>
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