There are some inf values in the mrc-header, that's all. In fact, even
the same command as you specify *without* --remove_nan will read and
re-write the file, fixing the problem. This has been fixed upstream and
will not be an issue in the next relion version.
/Björn
On 2017-02-24 12:06, Wolfgang Lugmayr wrote:
> dear all,
>
> with the latest relion2 we have a problem when viewing result mrc
> files in e.g. chimera 1.10, 1.11
> the chimerax 0.1 output says: RuntimeWarning: invalid value
> encountered in double_scalars
> we did 3d refine on cpu not gpu.
>
> if we convert the output mrc file with relion_image_handler
> --remove_nan, then everything is ok.
>
> did anybody else experience the same problems or does anybody know
> what causes this?
>
> cheers,
>
> wolfgang
>
>
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