Dear FSL experts,
I used to follow these steps to register FA maps to FAMRIB58:
flirt -ref ${FSLDIR}/data/standard/FMRIB58_FA_1mm_brain -in my_FA -omat my_affine_transf.mat
fnirt --in=my_FA --aff=my_affine_transf.mat --cout=my_nonlinear_transf --config=FA_2_FMRIB58_1mm
applywarp --ref=${FSLDIR}/data/standard/FMRIB58_FA_1mm_brain --in=my_FA --warp=my_nonlinear_transf --out=my_warped_FA
Are these steps still correct to register FA maps to MNI152 by replacing FAMRIB58 by MNI152 and the relevant config file. Are there any technical issues that prevent such registration?
Thank you for any comment or suggestion
John
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