Dear all experts,
I tried to register AAL template files (including _templates.nii and _labels.nii) in standard space to individual FA native space using FNIRT. All parameters were set through the predefined config file, except for changing the --in and the --infwhm. When I checked the registered label image, unfortunately, the result image looks like that it were slashed off the top of the brain. Why does this happen?
Besides, I did this registration using FLIRT to check if there would be any differences. The image was much better than FNIRT's but there was still a hole on the parietal region. Do I need to set additional parameters?
Any help would be much appreciated!
Best regards,
Charlie
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