Hi,
It might be worth reverting to an older version of that package ( which seems to be generating the error message ), we are using version 1.0.25 on our servers.
Kind Regards
Matthew
> On 8 Dec 2016, at 12:03, Parzer, Peter <[log in to unmask]> wrote:
>
>> packageVersion("party")
> [1] ‘1.1.2’
>
> I downgraded R to version 3.3.0 but I still get the same error.
> ________________________________________
> Von: FSL - FMRIB's Software Library <[log in to unmask]> im Auftrag von Matthew Webster <[log in to unmask]>
> Gesendet: Donnerstag, 8. Dezember 2016 12:11
> An: [log in to unmask]
> Betreff: Re: [FSL] [FSL] AW: fix error No valid labelling file specified
>
> Hello,
> Although we haven’t tested fix with 3.3.2 - can you let me know the result of running
>
> packageVersion("party")
>
> at the R prompt?
>
> Kind Regards
> Matthew
>
>> On 8 Dec 2016, at 08:26, Parzer, Peter <[log in to unmask]> wrote:
>>
>> That means, that I am already using the newest version. Thats bad news, no chance that the problem has already been solved.
>>
>>
>>
>> ________________________________
>> Von: FSL - FMRIB's Software Library <[log in to unmask]> im Auftrag von Stephen Smith <[log in to unmask]>
>> Gesendet: Donnerstag, 8. Dezember 2016 08:25
>> An: [log in to unmask]
>> Betreff: Re: [FSL] AW: fix error No valid labelling file specified
>>
>> Hi - 1.062beta *is* the current download - the link is on the user-guide page not the overview page:
>> https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FIX/UserGuide
>>
>> Cheers
>>
>>
>>
>> On 8 Dec 2016, at 07:23, Parzer, Peter <[log in to unmask]<mailto:[log in to unmask]>> wrote:
>>
>> Hi Kathryn,
>>
>> no, I have no solution yet. On the FIX Wiki-page https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FIX is an announcement of a new version 1.062 beta, but there is no download link for this new version. Maybe the problem is solved in the new version. I will try it as soon as someone at FMRIB kindly provide us with a download link.
>>
>> Peter
>>
>> ________________________________________
>> Von: FSL - FMRIB's Software Library <[log in to unmask]<mailto:[log in to unmask]>> im Auftrag von Kathryn Broadhouse <[log in to unmask]<mailto:[log in to unmask]>>
>> Gesendet: Mittwoch, 7. Dezember 2016 22:42
>> An: [log in to unmask]<mailto:[log in to unmask]>
>> Betreff: Re: [FSL] fix error No valid labelling file specified
>>
>> Hi Peter,
>>
>> I have been struggling with this same issue. Do you have a solution by chance?
>>
>> best wishes
>>
>> Kathryn
>>
>>
>> Dr Kathryn Broadhouse | Postdoctoral Research Fellow
>> Regenerative Neuroscience Group
>> Brain and Mind Centre
>> The University of Sydney
>> Level 4 Building K | 94 Mallett St Camperdown | NSW | 2050
>>
>> ________________________________________
>> From: FSL - FMRIB's Software Library [[log in to unmask]<mailto:[log in to unmask]>] on behalf of Parzer, Peter [[log in to unmask]<mailto:[log in to unmask]>]
>> Sent: Thursday, December 08, 2016 2:07 AM
>> To: [log in to unmask]<mailto:[log in to unmask]>
>> Subject: [FSL] fix error No valid labelling file specified
>>
>> Hi,
>>
>> I have been using fix1.06 for some time now without any problems, but since an update of R from 3.3.1 to 3.3.2 fix is failing with the error message "No valid labelling file specified". The tail of fix_2b_predict.log is:
>>
>> for(indx in c(1:6)) {
>> + # SVM
>> + eval(parse(text = paste("svm.rbf.prd",indx," <- attributes(predict(svm.rbf",indx,", test.data.",indx,", probability=T))$probabilities[,2]", sep = "")))
>> + eval(parse(text = paste("svm.lin.prd",indx," <- attributes(predict(svm.lin",indx,", test.data.",indx,", probability=T))$probabilities[,2]", sep = "")))
>> + eval(parse(text = paste("svm.pol.prd",indx," <- attributes(predict(svm.pol",indx,", test.data.",indx,", probability=T))$probabilities[,2]", sep = "")))
>> +
>> + # Tree
>> + eval(parse(text = paste("ctree", indx, " = ctree", indx, "@update()", sep = "")))
>> + eval(parse(text = paste("ctree.prd.test",indx," <- treeresponse(ctree",indx,", newdata = test.data.",indx,")", sep = "")))
>> + eval(parse(text = paste("ctree.prob.test",indx," <- c(1:length(ctree.prd.test",indx,"))", sep = "")))
>> + eval(parse(text = paste("for(i in c(1:length(ctree.prob.test",indx,"))){ctree.prob.test",indx,"[i] <- ctree.prd.test",indx,"[[i]][2]}", sep = "")))
>> +
>> + # KNN
>> + eval(parse(text = paste("tmp <- knn(train.data.",indx,"[,-dim(train.data.",indx,")[2]], test.data.",indx,", train.data.",indx,"[,dim(train.data.",indx,")[2]], k = k.knn, prob = T)", sep = "")))
>> + eval(parse(text = paste("knn.test",indx," <- attributes(tmp)", sep = "")))
>> + eval(parse(text = paste("knn.test",indx,"$prob[tmp==0] <- 1-knn.test",indx,"$prob[tmp==0]", sep = "")))
>> + }
>> Error in ctreefit(object = object, controls = controls, weights = weights, :
>> no slot of name "remove_weights" for this object of class "TreeGrowControl"
>> Calls: eval -> eval -> <Anonymous> -> ctreefit -> .Call
>> Execution halted
>>
>>
>>
>>
>> ---------------------------------------------------------------------------
>> Stephen M. Smith, Professor of Biomedical Engineering
>> Head of Analysis, Oxford University FMRIB Centre
>>
>> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
>> +44 (0) 1865 222726 (fax 222717)
>> [log in to unmask]<mailto:[log in to unmask]> http://www.fmrib.ox.ac.uk/~steve
>> ---------------------------------------------------------------------------
>>
>> Stop the cultural destruction of Tibet<http://smithinks.net>
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