Hi,
I'm trying to use eddy without topup on some diffusion data with a
single PE direction. I've noticed that for FSL 5.0.9 and the later
patched eddy, the top and bottom slices of the output image are blank
(=0, not even noise). This doesn't happen with older eddy. I've tried
both a single shell and a different two shell dataset. For the single
shell dataset the bottom-most slice did have a small polygon of signal
in one corner, it also happens when --repol is given.
Is this a bug or could it be cause by an issue like not all volumes
having full coverage of the FOV?
Thanks for your time,
Ian
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